Evidence map›Paper›PMID 38071207›Full record

ArticleNature communications2023

Resin acids play key roles in shaping microbial communities during degradation of spruce bark.

Amanda Sörensen Ristinmaa, Albert Tafur Rangel, Alexander Idström, Sebastian Valenzuela, Eduard J Kerkhoven, Phillip B Pope, Merima Hasani, Johan Larsbrink

Abstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Amanda Sörensen RistinmaaDepartment of Life Sciences, Chalmers University of Technology, SE-412 96, Gothenburg, Sweden.ORCID 0000-0003-0120-0330
Albert Tafur RangelDepartment of Life Sciences, Chalmers University of Technology, SE-412 96, Gothenburg, Sweden.ORCID 0000-0002-9428-183X
Alexander IdströmDepartment of Chemistry and Chemical Engineering, Chalmers University of Technology, SE-412 96, Gothenburg, Sweden.
Sebastian ValenzuelaDepartment of Medical Biochemistry and Cell Biology, University of Gothenburg, SE-405 30, Gothenburg, Sweden.ORCID 0000-0001-5153-8431
Eduard J KerkhovenDepartment of Life Sciences, Chalmers University of Technology, SE-412 96, Gothenburg, Sweden.ORCID 0000-0002-3593-5792
Phillip B PopeFaculty of Biosciences, Norwegian University of Life Sciences, NO-1433, Ås, Norway.ORCID 0000-0002-2067-4059
Merima HasaniDepartment of Chemistry and Chemical Engineering, Chalmers University of Technology, SE-412 96, Gothenburg, Sweden.
Johan LarsbrinkDepartment of Life Sciences, Chalmers University of Technology, SE-412 96, Gothenburg, Sweden. johan.larsbrink@chalmers.se.ORCID 0000-0001-8386-2914

Funding

Carl Tryggers Stiftelse för Vetenskaplig Forskning (Carl Trygger Foundation) CTS 21:1424Energimyndigheten (Swedish Energy Agency) 46559-1Novo Nordisk Fonden (Novo Nordisk Foundation) NNF20CC0035580Vetenskapsrådet (Swedish Research Council) 46559-1
6 · The paper itself

Abstract

The bark is the outermost defense of trees against microbial attack, largely thanks to toxicity and prevalence of extractive compounds. Nevertheless, bark decomposes in nature, though by which species and mechanisms remains unknown. Here, we have followed the development of microbial enrichments growing on spruce bark over six months, by monitoring both chemical changes in the material and performing community and metagenomic analyses. Carbohydrate metabolism was unexpectedly limited, and instead a key activity was metabolism of extractives. Resin acid degradation was principally linked to community diversification with specific bacteria revealed to dominate the process. Metagenome-guided isolation facilitated the recovery of the dominant enrichment strain in pure culture, which represents a new species (Pseudomonas abieticivorans sp. nov.), that can grow on resin acids as a sole carbon source. Our results illuminate key stages in degradation of an abundant renewable resource, and how defensive extractive compounds have major roles in shaping microbiomes.

Indexed as

MicrobiotaPiceaBacteriaMetagenomePlant Bark

Identifiers

PMID38071207
PMCPMC10710418

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.