Evidence map›Paper›PMID 38068946›Full record

ArticleInternational journal of molecular sciences2023

Highly Similar Tetramerization Domains from the p53 Protein of Different Mammalian Species Possess Varying Biophysical, Functional and Structural Properties.

Shuya Sakaguchi, Natsumi Nakagawa, Haytham M Wahba, Junya Wada, Rui Kamada, James G Omichinski, Kazuyasu Sakaguchi

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.9field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Shuya SakaguchiDepartment of Chemistry, Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan.
Natsumi NakagawaDepartment of Chemistry, Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan.ORCID 0000-0002-6712-9381
Haytham M WahbaDépartement de Biochimie et Médicine Moléculaire, Université de Montréal, C.P. 6128 Succursale Centre-Ville, Montréal, QC H3C 3J7, Canada.
Junya WadaDepartment of Chemistry, Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan.
Rui KamadaDepartment of Chemistry, Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan.ORCID 0000-0002-6118-5091
James G OmichinskiDépartement de Biochimie et Médicine Moléculaire, Université de Montréal, C.P. 6128 Succursale Centre-Ville, Montréal, QC H3C 3J7, Canada.ORCID 0000-0002-3543-1914
Kazuyasu SakaguchiDepartment of Chemistry, Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan.ORCID 0000-0002-8434-4171
Hokkaido University · JPBeni-Suef University · EGUniversité de Montréal · CA

Funding

Training and OutreachP30GM124166 · NIGMS · CORNELL UNIVERSITY · PI RICHARD A. CERIONE · 2019 to 2026
$28.3M
Overall (pp. 40-62)P41GM103485 · NIGMS · CORNELL UNIVERSITY · PI CERIONE, RICHARD A. · 2012 to 2018
$15.5M
NIGMS NIH HHS P30 GM124166NIGMS NIH HHS P41 GM103485
6 · The paper itself

Abstract

The p53 protein is a transcriptional regulatory factor and many of its functions require that it forms a tetrameric structure. Although the tetramerization domain of mammalian p53 proteins (p53TD) share significant sequence similarities, it was recently shown that the tree shrew p53TD is considerably more thermostable than the human p53TD. To determine whether other mammalian species display differences in this domain, we used biophysical, functional, and structural studies to compare the properties of the p53TDs from six mammalian model organisms (human, tree shrew, guinea pig, Chinese hamster, sheep, and opossum). The results indicate that the p53TD from the opossum and tree shrew are significantly more stable than the human p53TD, and there is a correlation between the thermostability of the p53TDs and their ability to activate transcription. Structural analysis of the tree shrew and opossum p53TDs indicated that amino acid substitutions within two distinct regions of their p53TDs can dramatically alter hydrophobic packing of the tetramer, and in particular substitutions at positions corresponding to F341 and Q354 of the human p53TD. Together, the results suggest that subtle changes in the sequence of the p53TD can dramatically alter the stability, and potentially lead to important changes in the functional activity, of the p53 protein.

Indexed as

Tumor Suppressor Protein p53AnimalsGuinea PigsHumansOpossumsSheepTupaiaTumor Suppressor Protein p53evolutionhydrophobic coreMet oxidationtetramerizationthermal stabilitytumor suppressor protein p53

Identifiers

PMID38068946
PMCPMC10706167
OpenAlexW4388913051

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.