Evidence map›Paper›PMID 38067337›Full record

ReviewCancers2023

Homologous Recombination Deficiency Detection Algorithms: A Systematic Review.

Lasse Ringsted Mark, Simone Karlsson Terp, Henrik Bygum Krarup, Mads Thomassen, Inge Søkilde Pedersen, Martin Bøgsted

Open access · goldAbstract readReview
In one paragraph

Review in Cancers, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.8field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
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  3. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Lasse Ringsted MarkDepartment of Molecular Diagnostics, Aalborg University Hospital, DK-9000 Aalborg, Denmark.ORCID 0000-0001-9832-6356
Simone Karlsson TerpDepartment of Molecular Diagnostics, Aalborg University Hospital, DK-9000 Aalborg, Denmark.ORCID 0000-0003-2635-3667
Henrik Bygum KrarupDepartment of Molecular Diagnostics, Aalborg University Hospital, DK-9000 Aalborg, Denmark.ORCID 0000-0001-5294-2428
Mads ThomassenDepartment of Clinical Genetics, Odense University Hospital, DK-5000 Odense C, Denmark.
Inge Søkilde PedersenDepartment of Molecular Diagnostics, Aalborg University Hospital, DK-9000 Aalborg, Denmark.ORCID 0000-0002-9902-8040
Martin BøgstedClinical Cancer Research Center, Aalborg University Hospital, DK-9000 Aalborg, Denmark.
Aalborg University Hospital · DKOdense University Hospital · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Homologous recombination deficiency (HRD) can arise from germline or somatic pathogenic variants as well as other genomic damage and epigenetic alterations in the HR repair pathway. Patients with tumors presenting with an HRD phenotype can show sensitivity to Poly (ADP-ribose) polymerase inhibitors (PARPis). Several promising tests to detect HRD have been developed based on different HRD definitions, biomarkers, and algorithms. However, no consensus on a gold standard HRD test has been established. In this systematic review, a comprehensive list of tests for the detection of HRD was identified and compared regarding HRD definition, biomarkers, and algorithms. PubMed's Medline and Elsevier's Embase were systematically searched, resulting in 27 eligible articles meeting the inclusion criteria. The primary challenge when comparing HRD tests lies in the lack of a consensus definition of HRD, as the HRD definition influences the proportion of samples being classified as HRD and impacts the classification performance. This systematic review provides an overview of available HRD tests that can inspire other researchers in searching for a gold standard HRD definition and highlights the importance of the factors that should be considered when choosing an HRD definition and tests for future planning of clinical trials and studies.

Indexed as

algorithmbioinformaticscancerhomologous recombination deficiencyHRD

Identifiers

PMID38067337
PMCPMC10705160
OpenAlexW4389144328

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.