Evidence map›Paper›PMID 38066301›Full record

ReviewNature reviews. Drug discovery2024

Integrating QSAR modelling and deep learning in drug discovery: the emergence of deep QSAR.

Alexander Tropsha, Olexandr Isayev, Alexandre Varnek, Gisbert Schneider, Artem Cherkasov

Abstract readReview
PubMed Publisher
In one paragraph

Review in Nature reviews. Drug discovery, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 155 papers.

0numbers the graph read from it
0cells of the map it votes in
155citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

155 citing papers in PubMed.

  1. Drug-likeness prioritised selection identifies anti-Journal of enzyme inhibition and medicinal chemistry · 2026
    Article
  2. Article
  3. Review
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  5. Scientific culture in the age of AI.Nature cell biology · 2026
    Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Molecules (Basel, Switzerland) · 2026
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Topology-Aware Deep Learning on Higher-Order Structures for Drug Response Prediction.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  16. Article
  17. Article
  18. Machine Learning for RNA-Targeting Drug Design.Journal of chemical information and modeling · 2026
    Review
  19. Article
  20. Article

95 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Alexander TropshaUniversity of North Carolina at Chapel Hill, Chapel Hill, NC, USA. alex_tropsha@unc.edu.ORCID 0000-0003-3802-8896
Olexandr IsayevCarnegie Mellon University, Pittsburgh, PA, USA.
Alexandre VarnekUniversity of Strasbourg, Strasbourg, France.ORCID 0000-0003-1886-925X
Gisbert SchneiderETH, Zurich, Switzerland.ORCID 0000-0001-6706-1084
Artem CherkasovUniversity of British Columbia, Vancouver, BC, Canada. artc@mail.ubc.ca.ORCID 0000-0002-1599-1439

Funding

Enabling the Accelerated Discovery of Novel Chemical Probes by Integration of Crystallographic, Computational, and Synthetic Chemistry ApproachesR01GM140154 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI TROPSHA, ALEXANDER, WILLSON, TIMOTHY M · 2021 to 2024
$2.4M
NIGMS NIH HHS R01 GM140154
6 · The paper itself

Abstract

Quantitative structure-activity relationship (QSAR) modelling, an approach that was introduced 60 years ago, is widely used in computer-aided drug design. In recent years, progress in artificial intelligence techniques, such as deep learning, the rapid growth of databases of molecules for virtual screening and dramatic improvements in computational power have supported the emergence of a new field of QSAR applications that we term 'deep QSAR'. Marking a decade from the pioneering applications of deep QSAR to tasks involved in small-molecule drug discovery, we herein describe key advances in the field, including deep generative and reinforcement learning approaches in molecular design, deep learning models for synthetic planning and the application of deep QSAR models in structure-based virtual screening. We also reflect on the emergence of quantum computing, which promises to further accelerate deep QSAR applications and the need for open-source and democratized resources to support computer-aided drug design.

Indexed as

Deep LearningQuantitative Structure-Activity RelationshipArtificial IntelligenceComputing MethodologiesDrug DesignDrug DiscoveryHumansQuantum Theory

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.