Evidence map›Paper›PMID 38065956›Full record

ArticleNature communications2023

Quantitative proteomics defines mechanisms of antiviral defence and cell death during modified vaccinia Ankara infection.

Jonas D Albarnaz, Joanne Kite, Marisa Oliveira, Hanqi Li, Ying Di, Maria H Christensen, Joao A Paulo, Robin Antrobus, Steven P Gygi, Florian I Schmidt and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 3 countries.

Jonas D Albarnaz *Cambridge Institute for Medical Research, University of Cambridge, Cambridge, CB2 0XY, UK. jonas.albarnaz@pirbright.ac.uk.ORCID 0000-0002-8792-813X
Joanne Kite *Cambridge Institute for Medical Research, University of Cambridge, Cambridge, CB2 0XY, UK.ORCID 0000-0003-1668-9351
Marisa Oliveira *Cambridge Institute for Medical Research, University of Cambridge, Cambridge, CB2 0XY, UK.
Hanqi LiCambridge Institute for Medical Research, University of Cambridge, Cambridge, CB2 0XY, UK.
Ying DiCambridge Institute for Medical Research, University of Cambridge, Cambridge, CB2 0XY, UK.
Maria H ChristensenInstitute of Innate Immunity, University of Bonn, 53127, Bonn, Germany.ORCID 0000-0003-4778-3009
Joao A PauloDepartment of Cell Biology, Harvard Medical School, 240 Longwood Avenue, Boston, MA, 02115, USA.ORCID 0000-0002-4291-413X
Robin AntrobusCambridge Institute for Medical Research, University of Cambridge, Cambridge, CB2 0XY, UK.
Steven P GygiDepartment of Cell Biology, Harvard Medical School, 240 Longwood Avenue, Boston, MA, 02115, USA.ORCID 0000-0001-7626-0034
Florian I SchmidtInstitute of Innate Immunity, University of Bonn, 53127, Bonn, Germany.ORCID 0000-0002-9979-9769
Edward L HuttlinDepartment of Cell Biology, Harvard Medical School, 240 Longwood Avenue, Boston, MA, 02115, USA.ORCID 0000-0002-1822-1173
Geoffrey L SmithDepartment of Pathology, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QP, UK.ORCID 0000-0002-3730-9955
Michael P WeekesCambridge Institute for Medical Research, University of Cambridge, Cambridge, CB2 0XY, UK. mpw1001@cam.ac.uk.ORCID 0000-0003-3196-5545
University of Cambridge · GBHarvard University · USUniversity of Bonn · DEThe Pirbright Institute · GB

Funding

New Sample Multiplexing Technologies to Identify Chemical Probes and Illuminate Ubiquitin BiologyR01GM067945 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI GYGI, STEVEN P · 2003 to 2024
$10.5M
Research Training in Pediatric OncologyT32CA136432 · NCI · DANA-FARBER CANCER INST · PI SCOTT A ARMSTRONG · 2009 to 2026
$7.9M
Systematic Exploration of the Human Interactome IVU24HG006673 · NHGRI · HARVARD MEDICAL SCHOOL · PI GYGI, STEVEN P, HARPER, JEFFREY W · 2018 to 2025
$6.0M
Advancing Multiplexed Isobaric Tag-based Strategies for Proteome ProfilingR01GM132129 · NIGMS · HARVARD MEDICAL SCHOOL · PI PAULO, JOAO A · 2019 to 2023
$1.7M
Medical Research Council MR/W025647/1NCI NIH HHS T32 CA136432NHGRI NIH HHS U24 HG006673NIGMS NIH HHS R01 GM067945NIGMS NIH HHS R01 GM132129
6 · The paper itself

Abstract

Modified vaccinia Ankara (MVA) virus does not replicate in human cells and is the vaccine deployed to curb the current outbreak of mpox. Here, we conduct a multiplexed proteomic analysis to quantify >9000 cellular and ~80% of viral proteins throughout MVA infection of human fibroblasts and macrophages. >690 human proteins are down-regulated >2-fold by MVA, revealing a substantial remodelling of the host proteome. >25% of these MVA targets are not shared with replication-competent vaccinia. Viral intermediate/late gene expression is necessary for MVA antagonism of innate immunity, and suppression of interferon effectors such as ISG20 potentiates virus gene expression. Proteomic changes specific to infection of macrophages indicate modulation of the inflammatory response, including inflammasome activation. Our approach thus provides a global view of the impact of MVA on the human proteome and identifies mechanisms that may underpin its abortive infection. These discoveries will prove vital to design future generations of vaccines.

Indexed as

VacciniaAntiviral AgentsCell DeathHumansProteomeProteomicsVaccinia virusAntiviral AgentsProteome

Identifiers

PMID38065956
PMCPMC10709566
OpenAlexW4389489397

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.