Evidence map›Paper›PMID 38064566›Full record

ArticleScience advances2023

In vivo protein turnover rates in varying oxygen tensions nominate MYBBP1A as a mediator of the hyperoxia response.

Xuewen Chen, Augustinus G Haribowo, Alan H Baik, Andrea Fossati, Erica Stevenson, Yiwen R Chen, Nabora S Reyes, Tien Peng, Michael A Matthay, Michela Traglia and 6 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 1 country.

Xuewen ChenInstitute of Cardiovascular Disease, Gladstone Institutes, San Francisco, CA, USA.ORCID 0000-0001-7476-591X
Augustinus G HaribowoInstitute of Cardiovascular Disease, Gladstone Institutes, San Francisco, CA, USA.
Alan H BaikInstitute of Cardiovascular Disease, Gladstone Institutes, San Francisco, CA, USA.ORCID 0000-0001-8840-8825
Andrea FossatiInstitute of Cardiovascular Disease, Gladstone Institutes, San Francisco, CA, USA.ORCID 0000-0001-5170-4903
Erica StevensonInstitute of Cardiovascular Disease, Gladstone Institutes, San Francisco, CA, USA.
Yiwen R ChenDepartment of Chemical and Systems Biology, Stanford University, Stanford, CA, USA.
Nabora S ReyesDepartment of Medicine and Division of Pulmonary, Critical Care, Allergy and Sleep Medicine, University of California San Francisco, San Francisco, CA, USA.ORCID 0000-0002-9096-9426
Tien PengDepartment of Medicine and Division of Pulmonary, Critical Care, Allergy and Sleep Medicine, University of California San Francisco, San Francisco, CA, USA.ORCID 0000-0002-2226-4635
Michael A MatthayCardiovascular Research Institute, University of California San Francisco, San Francisco, CA, USA.ORCID 0000-0003-3039-8155
Michela TragliaInstitute of Data Science and Biotechnology, Gladstone Institutes, San Francisco, CA, USA.
Alexander R PicoInstitute of Data Science and Biotechnology, Gladstone Institutes, San Francisco, CA, USA.ORCID 0000-0001-5706-2163
Daniel F JaroszDepartment of Chemical and Systems Biology, Stanford University, Stanford, CA, USA.
Abigail BuchwalterCardiovascular Research Institute, University of California San Francisco, San Francisco, CA, USA.ORCID 0000-0001-7181-6961
Sina GhaemmaghamiMass Spectrometry Resource Laboratory, University of Rochester, Rochester, NY, USA.ORCID 0000-0002-8696-2950
Danielle L SwaneyInstitute of Cardiovascular Disease, Gladstone Institutes, San Francisco, CA, USA.ORCID 0000-0001-6119-6084
Isha H JainInstitute of Cardiovascular Disease, Gladstone Institutes, San Francisco, CA, USA.ORCID 0000-0001-5053-0964
Gladstone Institutes · USUniversity of California, San Francisco · USQB3 · USStanford University · USUniversity of Rochester · US

Funding

MOLECULAR AND CELLULAR BASIS OF CARDIOVASCULAR DISEASET32HL007731 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Brian L Black · 1992 to 2026
$12.4M
The prevalence and mechanism of selectivity in basal autophagyR35GM119502 · NIGMS · UNIVERSITY OF ROCHESTER · PI SINA GHAEMMAGHAMI · 2016 to 2026
$5.9M
Discovery of protein aggregates during vertebrate aging and neurodegenerationRF1AG057334 · NIA · STANFORD UNIVERSITY · PI BRUNET, ANNE, JAROSZ, DANIEL · 2017 to 2017
$3.7M
Redesigning a Neuron's Breath: A Modern Twist to Classical Oxygen BiologyDP5OD026398 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JAIN, ISHA HIMANI · 2018 to 2022
$2.2M
NHLBI NIH HHS T32 HL007731NIA NIH HHS RF1 AG057334NIGMS NIH HHS R35 GM119502NIH HHS DP5 OD026398
6 · The paper itself

Abstract

Oxygen deprivation and excess are both toxic. Thus, the body's ability to adapt to varying oxygen tensions is critical for survival. While the hypoxia transcriptional response has been well studied, the post-translational effects of oxygen have been underexplored. In this study, we systematically investigate protein turnover rates in mouse heart, lung, and brain under different inhaled oxygen tensions. We find that the lung proteome is the most responsive to varying oxygen tensions. In particular, several extracellular matrix (ECM) proteins are stabilized in the lung under both hypoxia and hyperoxia. Furthermore, we show that complex 1 of the electron transport chain is destabilized in hyperoxia, in accordance with the exacerbation of associated disease models by hyperoxia and rescue by hypoxia. Moreover, we nominate MYBBP1A as a hyperoxia transcriptional regulator, particularly in the context of rRNA homeostasis. Overall, our study highlights the importance of varying oxygen tensions on protein turnover rates and identifies tissue-specific mediators of oxygen-dependent responses.

Indexed as

HyperoxiaOxygenAnimalsBrainDNA-Binding ProteinsHypoxiaLungMiceRNA-Binding ProteinsTranscription FactorsDNA-Binding ProteinsMybbp1a protein, mouseOxygenRNA-Binding ProteinsTranscription Factors

Identifiers

PMID38064566
PMCPMC10708181
OpenAlexW4389474861

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.