Evidence map›Paper›PMID 38063847›Full record

ArticleDevelopment (Cambridge, England)2024

Energy metabolism modulates the regulatory impact of activators on gene expression.

Sha Qiao, Sebastian Bernasek, Kevin D Gallagher, Jessica O'Connell, Shigehiro Yamada, Neda Bagheri, Luis A N Amaral, Richard W Carthew

Open access · hybridAbstract read
In one paragraph

Article in Development (Cambridge, England), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Sha QiaoDepartment of Molecular Biosciences, Northwestern University, Evanston, IL 60208, USA.
Sebastian BernasekDepartment of Chemical and Biological Engineering, Northwestern University, Evanston, IL 60208, USA.
Kevin D GallagherDepartment of Molecular Biosciences, Northwestern University, Evanston, IL 60208, USA.
Jessica O'ConnellDepartment of Molecular Biosciences, Northwestern University, Evanston, IL 60208, USA.
Shigehiro YamadaDepartment of Molecular Biosciences, Northwestern University, Evanston, IL 60208, USA.
Neda BagheriDepartment of Chemical and Biological Engineering, Northwestern University, Evanston, IL 60208, USA.
Luis A N AmaralDepartment of Chemical and Biological Engineering, Northwestern University, Evanston, IL 60208, USA.ORCID 0000-0002-3762-789X
Richard W CarthewDepartment of Molecular Biosciences, Northwestern University, Evanston, IL 60208, USA.ORCID 0000-0003-0343-0156
Northwestern University · US

Funding

Non-coding RNAs and their mechanisms and functions-RenewalR35GM118144 · NIGMS · NORTHWESTERN UNIVERSITY · PI Richard W. CARTHEW · 2016 to 2026
$6.8M
NIGMS NIH HHS R35 GM118144NIH HHS GM118144
6 · The paper itself

Abstract

Gene expression is a regulated process fueled by ATP consumption. Therefore, regulation must be coupled to constraints imposed by the level of energy metabolism. Here, we explore this relationship both theoretically and experimentally. A stylized mathematical model predicts that activators of gene expression have variable impact depending on metabolic rate. Activators become less essential when metabolic rate is reduced and more essential when metabolic rate is enhanced. We find that, in the Drosophila eye, expression dynamics of the yan gene are less affected by loss of EGFR-mediated activation when metabolism is reduced, and the opposite effect is seen when metabolism is enhanced. The effects are also seen at the level of pattern regularity in the adult eye, where loss of EGFR-mediated activation is mitigated by lower metabolism. We propose that gene activation is tuned by energy metabolism to allow for faithful expression dynamics in the face of variable metabolic conditions.

Indexed as

Drosophila ProteinsRepressor ProteinsAnimalsDrosophilaEnergy MetabolismErbB ReceptorsGene ExpressionDrosophila ProteinsErbB ReceptorsRepressor ProteinsDrosophilaGene regulationMetabolism

Identifiers

PMID38063847
PMCPMC10820824
OpenAlexW4389477777

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.