Evidence map›Paper›PMID 38063384›Full record

ArticleMicrobiology spectrum2024

Integrase-associated niche differentiation of endogenous large DNA viruses in crustaceans.

Satoshi Kawato, Reiko Nozaki, Hidehiro Kondo, Ikuo Hirono

Abstract read
In one paragraph

Article in Microbiology spectrum, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Satoshi KawatoLaboratory of Genome Science, Tokyo University of Marine Science and Technology , Tokyo, Japan.ORCID 0000-0003-2401-5621
Reiko NozakiLaboratory of Genome Science, Tokyo University of Marine Science and Technology , Tokyo, Japan.
Hidehiro KondoLaboratory of Genome Science, Tokyo University of Marine Science and Technology , Tokyo, Japan.ORCID 0000-0001-5102-6831
Ikuo HironoLaboratory of Genome Science, Tokyo University of Marine Science and Technology , Tokyo, Japan.ORCID 0000-0002-2355-3121

Funding

MEXT | Japan Science and Technology Agency (JST) JPMJSA1806MEXT | Japan Society for the Promotion of Science (JSPS) 19J21518MEXT | Japan Society for the Promotion of Science (JSPS) JP22H00379
6 · The paper itself

Abstract

importanceCrustacean genomes harbor sequences originating from a family of large DNA viruses called nimaviruses, but it is unclear why they are present. We show that endogenous nimaviruses selectively insert into repetitive sequences within the host genome, and this insertion specificity was correlated with different types of integrases, which are DNA recombination enzymes encoded by the nimaviruses themselves. This suggests that endogenous nimaviruses have colonized various genomic niches through the acquisition of integrases with different insertion specificities. Our results point to a novel survival strategy of endogenous large DNA viruses colonizing the host genomes. These findings may clarify the evolution and spread of nimaviruses in crustaceans and lead to measures to control and prevent the spread of pathogenic nimaviruses in aquaculture settings.

Indexed as

DNA VirusesIntegrasesGenomeRepetitive Sequences, Nucleic AcidIntegrasesendogenous viral elementsintegraseNimaviridaetransposable elementstyrosine recombinaseWSSV

Identifiers

PMID38063384
PMCPMC10871703

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.