Evidence map›Paper›PMID 38062752›Full record

ArticleHuman gene therapy2024

Concise Analysis of Single-Stranded DNA of Recombinant Adeno-Associated Virus By Automated Electrophoresis System.

Yuzhe Yuan, Kiyoko Higashiyama, Noriko Hashiba, Kyoko Masumi-Koizumi, Keisuke Yusa, Kazuhisa Uchida

Open access · hybridAbstract read
In one paragraph

Article in Human gene therapy, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.9field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Yuzhe YuanGraduate School of Science, Technology and Innovation, Kobe University, Chuo-ku, Kobe, Japan.
Kiyoko HigashiyamaGraduate School of Science, Technology and Innovation, Kobe University, Chuo-ku, Kobe, Japan.
Noriko HashibaGraduate School of Science, Technology and Innovation, Kobe University, Chuo-ku, Kobe, Japan.
Kyoko Masumi-KoizumiGraduate School of Science, Technology and Innovation, Kobe University, Chuo-ku, Kobe, Japan.
Keisuke YusaGraduate School of Science, Technology and Innovation, Kobe University, Chuo-ku, Kobe, Japan.ORCID 0000-0003-3392-9871
Kazuhisa UchidaGraduate School of Science, Technology and Innovation, Kobe University, Chuo-ku, Kobe, Japan.ORCID 0000-0001-7360-4356
Kobe University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recombinant adeno-associated virus (rAAV) is a prominent viral vector currently available for human gene therapy. The diameter of the rAAV capsid is ∼25 nm, and a positive or negative single-stranded DNA is packaged within the vector capsid. In this report, we describe a concise method to examine the extracted rAAV genome using an automated electrophoresis system. The rAAV genome, prepared from vector particles through either heat treatment at 95°C for 10 min or the phenol-chloroform extraction method, was analyzed using an automated electrophoresis system under denaturation conditions. The heat treatment protocol demonstrated a comparable yield with the phenol-chloroform extraction protocol, and the quantified amounts of the rAAV genome obtained using the automated electrophoresis system were consistent with those quantitated by quantitative PCR. Additionally, crude rAAV extractions could also be analyzed by the automated electrophoresis system after DNase I treatment. These results indicated that this simple and quick analysis using automated electrophoresis is highly useful for confirming the purity and integrity of the rAAV genome.

Indexed as

DependovirusDNA, Single-StrandedChloroformElectrophoresisGenetic VectorsHumansPhenolsChloroformDNA, Single-StrandedPhenolsautomated electrophoresisinverted terminal repeatrecombinant adeno-associated virussingle-stranded DNA

Identifiers

PMID38062752
PMCPMC10890949
OpenAlexW4389483376

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.