ArticlePlant communications2024
Population genomic analysis unravels the evolutionary roadmap of pericarp color in rice.
Article in Plant communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
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Who cites it
11 citing papers in PubMed.
- Genomic analyses of weedy rice reveal historical connections between European and northwestern Chinese rice.Plant communications · 2026Article
- Genome Editing Approaches in Flax (International journal of molecular sciences · 2026Review
- The Science of Colour in Rice: A Review on Health Benefits, Genetic Regulation, and Anthocyanin Stability.Rice (New York, N.Y.) · 2026Review
- Integrative multi-omics analysis reveals the domestication mechanism of black rice.National science review · 2026Article
- To awn or not to awn: Revisiting the evolution of awnedness during rice domestication and improvement.Plant communications · 2026Review
- Harnessing neo-domestication of wild pigmented rice for enhanced nutrition and sustainable agriculture.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Review
- Prime editing via precise sequence insertion restores function of the recessive rc allele in rice.Plant cell reports · 2025Article
- The NAT1-bHLH110-CER1/CER1L module regulates heat stress tolerance in rice.Nature genetics · 2025Article
- Comprehensive genetic diversity revealed in the pre-breeding RILs (Frontiers in genetics · 2025Article
- Characterization of a Major Quantitative Trait Locus for the Whiteness of Rice Grain Using Chromosome Segment Substitution Lines.Plants (Basel, Switzerland) · 2024Article
- Improving Rice Grain Quality Through Ecotype Breeding for Enhancing Food and Nutritional Security in Asia-Pacific Region.Rice (New York, N.Y.) · 2024Review
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Authors and funding
7 authors.
Funding
Abstract
Pigmented rice stands out for its nutritional value and is gaining more and more attention. Wild rice, domesticated red rice, and weedy rice all have a red pericarp and a comprehensive genetic background in terms of the red-pericarp phenotype. We performed population genetic analyses using 5104 worldwide rice accessions, including 2794 accessions with red or black pericarps, 85 of which were newly sequenced in this study. The results suggested an evolutionary trajectory of red landraces originating from wild rice, and the split times of cultivated red and white rice populations were estimated to be within the past 3500 years. Cultivated red rice was found to feralize to weedy rice, and weedy rice could be further re-domesticated to cultivated red rice. A genome-wide association study based on the 2794 accessions with pigmented pericarps revealed several new candidate genes associated with the red-pericarp trait for further functional characterization. Our results provide genomic evidence for the origin of pigmented rice and a valuable genomic resource for genetic investigation and breeding of pigmented rice.
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