Evidence map›Paper›PMID 38061012›Full record

ArticleJCO clinical cancer informatics2023

MI-Common Data Model: Extending Observational Medical Outcomes Partnership-Common Data Model (OMOP-CDM) for Registering Medical Imaging Metadata and Subsequent Curation Processes.

Varvara Kalokyri, Haridimos Kondylakis, Stelios Sfakianakis, Katerina Nikiforaki, Ioannis Karatzanis, Simone Mazzetti, Nikolaos Tachos, Daniele Regge, Dimitrios I Fotiadis, Konstantinos Marias and 1 more

Abstract read
In one paragraph

Article in JCO clinical cancer informatics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Varvara KalokyriInstitute of Computer Science, Foundation of Research and Technology Hellas, Heraklion, Greece.ORCID 0000-0002-5245-8238
Haridimos KondylakisInstitute of Computer Science, Foundation of Research and Technology Hellas, Heraklion, Greece.ORCID 0000-0002-9917-4486
Stelios SfakianakisInstitute of Computer Science, Foundation of Research and Technology Hellas, Heraklion, Greece.ORCID 0000-0001-8424-4157
Katerina NikiforakiInstitute of Computer Science, Foundation of Research and Technology Hellas, Heraklion, Greece.ORCID 0000-0003-0792-9800
Ioannis KaratzanisInstitute of Computer Science, Foundation of Research and Technology Hellas, Heraklion, Greece.ORCID 0000-0002-3909-7503
Simone MazzettiInstitute of Computer Science, Foundation of Research and Technology Hellas, Heraklion, Greece.ORCID 0000-0001-6011-4040
Nikolaos TachosInstitute of Computer Science, Foundation of Research and Technology Hellas, Heraklion, Greece.
Daniele ReggeInstitute of Computer Science, Foundation of Research and Technology Hellas, Heraklion, Greece.
Dimitrios I FotiadisInstitute of Computer Science, Foundation of Research and Technology Hellas, Heraklion, Greece.
Konstantinos MariasInstitute of Computer Science, Foundation of Research and Technology Hellas, Heraklion, Greece.ORCID 0000-0003-3783-5223
Manolis TsiknakisInstitute of Computer Science, Foundation of Research and Technology Hellas, Heraklion, Greece.ORCID 0000-0001-8454-1450

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeThe explosion of big data and artificial intelligence has rapidly increased the need for integrated, homogenized, and harmonized health data. Many common data models (CDMs) and standard vocabularies have appeared in an attempt to offer harmonized access to the available information, with Observational Medical Outcomes Partnership (OMOP)-CDM being one of the most prominent ones, allowing the standardization and harmonization of health care information. However, despite its flexibility, still capturing imaging metadata along with the corresponding clinical data continues to pose a challenge. This challenge arises from the absence of a comprehensive standard representation for image-related information and subsequent image curation processes and their interlinkage with the respective clinical information. Successful resolution of this challenge holds the potential to enable imaging and clinical data to become harmonized, quality-checked, annotated, and ready to be used in conjunction, in the development of artificial intelligence models and other data-dependent use cases.

methodsTo address this challenge, we introduce medical imaging (MI)-CDM-an extension of the OMOP-CDM specifically designed for registering medical imaging data and curation-related processes. Our modeling choices were the result of iterative numerous discussions among clinical and AI experts to enable the integration of imaging and clinical data in the context of the ProCAncer-I project, for answering a set of clinical questions across the prostate cancer's continuum.

resultsOur MI-CDM extension has been successfully implemented for the use case of prostate cancer for integrating imaging and curation metadata along with clinical information by using the OMOP-CDM and its oncology extension.

conclusionBy using our proposed terminologies and standardized attributes, we demonstrate how diverse imaging modalities can be seamlessly integrated in the future.

Indexed as

MetadataProstatic NeoplasmsArtificial IntelligenceDatabases, FactualDiagnostic ImagingHumansMale

Identifiers

PMID38061012
PMCPMC10715775

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.