Evidence map›Paper›PMID 38060625›Full record

ArticlePlant physiology2024

HISTONE DEACETYLASE19 Controls Ovule Number Determination and Transmitting Tract Differentiation.

Silvia Manrique, Alex Cavalleri, Andrea Guazzotti, Gonzalo H Villarino, Sara Simonini, Aureliano Bombarely, Tetsuya Higashiyama, Ueli Grossniklaus, Chiara Mizzotti, Ana Marta Pereira and 6 more

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. VPS13 has an important role in female germline development in Arabidopsis.The Plant journal : for cell and molecular biology · 2026
    Article
  3. Foliar dewdroplet-induced redox cascades promote early flowering inProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Focus on epigenetics.Plant physiology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 6 countries.

Silvia ManriqueDipartimento di Bioscienze, Università degli Studi di Milano, Via Giovanni Celoria 26, Milan 20133, Italy.ORCID 0000-0001-6241-4143
Alex CavalleriDipartimento di Bioscienze, Università degli Studi di Milano, Via Giovanni Celoria 26, Milan 20133, Italy.ORCID 0000-0003-4929-222X
Andrea GuazzottiDipartimento di Bioscienze, Università degli Studi di Milano, Via Giovanni Celoria 26, Milan 20133, Italy.ORCID 0000-0003-4415-4004
Gonzalo H VillarinoDepartment of Plant and Microbial Biology, North Carolina State University, Raleigh, NC 27606, USA.ORCID 0000-0003-2832-6785
Sara SimoniniDepartment of Plant and Microbial Biology & Zurich-Basel Plant Science Center, University of Zurich, Zollikerstrasse 107, Zurich CH-8008, Switzerland.ORCID 0000-0002-3855-2447
Aureliano BombarelyDipartimento di Bioscienze, Università degli Studi di Milano, Via Giovanni Celoria 26, Milan 20133, Italy.ORCID 0000-0001-6257-8914
Tetsuya HigashiyamaInstitute of Transformative Bio-Molecules (ITbM), Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8601, Japan.ORCID 0000-0002-7346-360X
Ueli GrossniklausDepartment of Plant and Microbial Biology & Zurich-Basel Plant Science Center, University of Zurich, Zollikerstrasse 107, Zurich CH-8008, Switzerland.ORCID 0000-0002-0522-8974
Chiara MizzottiDipartimento di Bioscienze, Università degli Studi di Milano, Via Giovanni Celoria 26, Milan 20133, Italy.ORCID 0000-0003-3644-2890
Ana Marta PereiraFaculdade de Ciências da Universidade do Porto, Departamento de Biologia, Universidade do Porto, rua do Campo Alegre, Porto 4169-007, Portugal.ORCID 0000-0003-3665-7592
Silvia CoimbraFaculdade de Ciências da Universidade do Porto, Departamento de Biologia, Universidade do Porto, rua do Campo Alegre, Porto 4169-007, Portugal.ORCID 0000-0001-9421-2538
Subramanian SankaranarayananDepartment of Biological Sciences and Engineering, Indian Institute of Technology Gandhinagar, Palaj, Gujarat 382355, India.ORCID 0000-0002-0398-2113
Elisabetta OnelliDipartimento di Bioscienze, Università degli Studi di Milano, Via Giovanni Celoria 26, Milan 20133, Italy.ORCID 0000-0003-3724-4116
Simona MasieroDipartimento di Bioscienze, Università degli Studi di Milano, Via Giovanni Celoria 26, Milan 20133, Italy.ORCID 0000-0002-7563-7634
Robert G FranksDepartment of Plant and Microbial Biology, North Carolina State University, Raleigh, NC 27606, USA.ORCID 0000-0002-3978-1030
Lucia ColomboDipartimento di Bioscienze, Università degli Studi di Milano, Via Giovanni Celoria 26, Milan 20133, Italy.ORCID 0000-0001-8415-1399
University of Milan · ITNorth Carolina State University · USUniversidade do Porto · PTUniversity of Zurich · CHIndian Institute of Technology Gandhinagar · INTokyo University of Science · JP

Funding

Swiss National Science Foundation 31003A_179553
6 · The paper itself

Abstract

The gynoecium is critical for the reproduction of flowering plants as it contains the ovules and the tissues that foster pollen germination, growth, and guidance. These tissues, known as the reproductive tract (ReT), comprise the stigma, style, and transmitting tract (TT). The ReT and ovules originate from the carpel margin meristem (CMM) within the pistil. SHOOT MERISTEMLESS (STM) is a key transcription factor for meristem formation and maintenance. In all above-ground meristems, including the CMM, local STM downregulation is required for organ formation. However, how this downregulation is achieved in the CMM is unknown. Here, we have studied the role of HISTONE DEACETYLASE 19 (HDA19) in Arabidopsis (Arabidopsis thaliana) during ovule and ReT differentiation based on the observation that the hda19-3 mutant displays a reduced ovule number and fails to differentiate the TT properly. Fluorescence-activated cell sorting coupled with RNA-sequencing revealed that in the CMM of hda19-3 mutants, genes promoting organ development are downregulated while meristematic markers, including STM, are upregulated. HDA19 was essential to downregulate STM in the CMM, thereby allowing ovule formation and TT differentiation. STM is ectopically expressed in hda19-3 at intermediate stages of pistil development, and its downregulation by RNA interference alleviated the hda19-3 phenotype. Chromatin immunoprecipitation assays indicated that STM is a direct target of HDA19 during pistil development and that the transcription factor SEEDSTICK is also required to regulate STM via histone acetylation. Thus, we identified factors required for the downregulation of STM in the CMM, which is necessary for organogenesis and tissue differentiation.

Indexed as

ArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantHistone DeacetylasesHistonesMADS Domain ProteinsMeristemOvuleTranscription FactorsArabidopsis ProteinsHDA19 protein, ArabidopsisHistone DeacetylasesHistonesMADS Domain ProteinsSEEDSTICK protein, ArabidopsisTranscription Factors

Identifiers

PMID38060625
PMCPMC10980524
OpenAlexW4389455444

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.