Evidence map›Paper›PMID 38060459›Full record

ArticlePLoS computational biology2023

Ten simple rules for managing laboratory information.

Casey-Tyler Berezin, Luis U Aguilera, Sonja Billerbeck, Philip E Bourne, Douglas Densmore, Paul Freemont, Thomas E Gorochowski, Sarah I Hernandez, Nathan J Hillson, Connor R King and 11 more

Abstract read
In one paragraph

Article in PLoS computational biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Viable Storage of Botrytis Conidia and Sclerotia.Methods in molecular biology (Clifton, N.J.) · 2027
    Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. Ten quick tips to build a Model Life Cycle.PLoS computational biology · 2025
    Article
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Casey-Tyler BerezinDepartment of Chemical and Biological Engineering, Colorado State University, Fort Collins, Colorado, United States of America.ORCID https://orcid.org/0000-0001-7201-8929
Luis U AguileraDepartment of Chemical and Biological Engineering, Colorado State University, Fort Collins, Colorado, United States of America.ORCID https://orcid.org/0000-0003-0609-539X
Sonja BillerbeckMolecular Microbiology Unit, Faculty of Science and Engineering, University of Groningen, Groningen, the Netherlands.
Philip E BourneSchool of Data Science, University of Virginia, Charlottesville, Virginia, United States of America.ORCID https://orcid.org/0000-0002-7618-7292
Douglas DensmoreCollege of Engineering, Boston University, Boston, Massachusetts, United States of America.ORCID https://orcid.org/0000-0002-7666-6808
Paul FreemontDepartment of Infectious Disease, Imperial College, London, United Kingdom.
Thomas E GorochowskiSchool of Biological Sciences, University of Bristol, Bristol, United Kingdom.ORCID https://orcid.org/0000-0003-1702-786X
Sarah I HernandezDepartment of Chemical and Biological Engineering, Colorado State University, Fort Collins, Colorado, United States of America.ORCID https://orcid.org/0000-0002-1217-234X
Nathan J HillsonBiological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America.ORCID https://orcid.org/0000-0002-9169-3978
Connor R KingDepartment of Chemical and Biological Engineering, Colorado State University, Fort Collins, Colorado, United States of America.ORCID https://orcid.org/0000-0001-5863-9876
Michael KöpkeLanzaTech, Skokie, Illinois, United States of America.
Shuyi MaCenter for Global Infectious Disease Research, Seattle Children's Hospital, University of Washington Medicine, Seattle, Washington, United States of America.
Katie M MillerDepartment of Chemical and Biological Engineering, Colorado State University, Fort Collins, Colorado, United States of America.
Tae Seok MoonDepartment of Energy, Environmental & Chemical Engineering, Washington University in St. Louis, St. Louis, Missouri, United States of America.
Jason H MooreDepartment of Computational Biomedicine, Cedars-Sinai Medical Center, Los Angeles, California, United States of America.
Brian MunskyDepartment of Chemical and Biological Engineering, Colorado State University, Fort Collins, Colorado, United States of America.
Chris J MyersDepartment of Electrical, Computer & Energy Engineering, University of Colorado Boulder, Boulder, Colorado, United States of America.
Dequina A NicholasDepartment of Molecular Biology & Biochemistry, University of California Irvine, Irvine, California, United States of America.
Samuel J PeccoudDepartment of Electrical and Computer Engineering, Colorado State University, Fort Collins, Colorado, United States of America.ORCID https://orcid.org/0009-0006-2930-7526
Wen ZhouDepartment of Statistics, Colorado State University, Fort Collins, Colorado, United States of America.
Jean PeccoudDepartment of Chemical and Biological Engineering, Colorado State University, Fort Collins, Colorado, United States of America.ORCID https://orcid.org/0000-0001-7649-6127

Funding

Tunable therapeutic modulation of the gut microbiome by engineered probioticsR01AT009741 · NCCIH · WASHINGTON UNIVERSITY · PI DANTAS, GAUTAM, MOON, TAE SEOK · 2018 to 2022
$3.5M
Using cellular fluctuations and computational analyses to probe biological mechanismsR35GM124747 · NIGMS · COLORADO STATE UNIVERSITY · PI Brian Munsky · 2017 to 2026
$3.3M
Predoctoral Training in Quantitative Cell & Molecular BiologyT32GM132057 · NIGMS · COLORADO STATE UNIVERSITY · PI Karen Marie Dobos, Brian Munsky · 2019 to 2026
$2.9M
Sex Differences in lipid antigen presentation, impact of lipid antigen presentation on peripheral lipid metabolismDP2AI171121 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI Dequina Angelina Nicholas · 2022 to 2026
$2.8M
Supplement: Development of a technology to certify engineered DNA moleculesR01GM147816 · NIGMS · COLORADO STATE UNIVERSITY · PI PECCOUD, JEAN M · 2022 to 2024
$1.4M
The Role of Energy Balance in Gonadotrope and Reproductive FunctionR00HD098330 · NICHD · UNIVERSITY OF CALIFORNIA-IRVINE · PI NICHOLAS, DEQUINA ANGELINA · 2021 to 2023
$816k
Statistical methods for higher order dependences to understand protein functionsR01GM144961 · NIGMS · COLORADO STATE UNIVERSITY · PI ZHOU, WEN · 2021 to 2023
$600k
Leveraging cytoplasmic transcription to develop self-amplifying DNA vaccinesR21AI168482 · NIAID · COLORADO STATE UNIVERSITY · PI PECCOUD, JEAN M · 2023 to 2024
$400k
NCCIH NIH HHS R01 AT009741NIAID NIH HHS DP2 AI171121NIAID NIH HHS R21 AI168482NICHD NIH HHS R00 HD098330NIGMS NIH HHS R01 GM144961NIGMS NIH HHS R01 GM147816NIGMS NIH HHS R35 GM124747NIGMS NIH HHS T32 GM132057
6 · The paper itself

Abstract

Information is the cornerstone of research, from experimental (meta)data and computational processes to complex inventories of reagents and equipment. These 10 simple rules discuss best practices for leveraging laboratory information management systems to transform this large information load into useful scientific findings.

Identifiers

PMID38060459
PMCPMC10703290

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.