Evidence map›Paper›PMID 38058211›Full record

ArticleBioinformatics (Oxford, England)2024

Artificial intelligence-assisted quantification and assessment of whole slide images for pediatric kidney disease diagnosis.

Chunyue Feng, Kokhaur Ong, David M Young, Bingxian Chen, Longjie Li, Xinmi Huo, Haoda Lu, Weizhong Gu, Fei Liu, Hongfeng Tang and 12 more

Abstract read
In one paragraph

Article in Bioinformatics (Oxford, England), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Chunyue FengDepartment of Nephrology, Children's Hospital, Zhejiang University School of Medicine, Hangzhou 310000, China.
Kokhaur OngBioinformatics Institute, A*STAR, Singapore 138673, Singapore.
David M YoungInstitute of Molecular and Cell Biology, A*STAR, Singapore 138673, Singapore.
Bingxian ChenNingbo Konfoong Bioinformation Tech Co., Ltd., Ningbo 315000, China.
Longjie LiBioinformatics Institute, A*STAR, Singapore 138673, Singapore.
Xinmi HuoBioinformatics Institute, A*STAR, Singapore 138673, Singapore.
Haoda LuBioinformatics Institute, A*STAR, Singapore 138673, Singapore.
Weizhong GuNational Clinical Research Center for Child Health, Hangzhou 310000, China.
Fei LiuDepartment of Nephrology, Children's Hospital, Zhejiang University School of Medicine, Hangzhou 310000, China.
Hongfeng TangNational Clinical Research Center for Child Health, Hangzhou 310000, China.
Manli ZhaoNational Clinical Research Center for Child Health, Hangzhou 310000, China.
Min YangNational Clinical Research Center for Child Health, Hangzhou 310000, China.
Kun ZhuNational Clinical Research Center for Child Health, Hangzhou 310000, China.
Limin HuangDepartment of Nephrology, Children's Hospital, Zhejiang University School of Medicine, Hangzhou 310000, China.
Qiang WangNingbo Konfoong Bioinformation Tech Co., Ltd., Ningbo 315000, China.
Gabriel Pik Liang MariniBioinformatics Institute, A*STAR, Singapore 138673, Singapore.
Kun GuiNingbo Konfoong Bioinformation Tech Co., Ltd., Ningbo 315000, China.
Hao HanInstitute of Molecular and Cell Biology, A*STAR, Singapore 138673, Singapore.
Stephan J SandersDepartment of Psychiatry and Behavioral Sciences, UCSF Weill Institute for Neurosciences, University of California, San Francisco, CA, 94143, United States.ORCID 0000-0001-9112-5148
Lin LiDepartment of Nephrology, Shanghai Changzheng Hospital, Naval Medical University, Shanghai 200003, China.
Weimiao YuBioinformatics Institute, A*STAR, Singapore 138673, Singapore.ORCID 0000-0001-5092-1009
Jianhua MaoDepartment of Nephrology, Children's Hospital, Zhejiang University School of Medicine, Hangzhou 310000, China.ORCID 0000-0002-6076-3806

Funding

Applied and Translational ResearchBiomedical Research CouncilKey Research, Development Plan of Zhejiang Province 2021C03079National Natural Foundation of China U20A20351Singapore Agency of Science Technology and ResearchZhejiang Provincial Natural Science Foundation of China LY22H050002
6 · The paper itself

Abstract

motivationPediatric kidney disease is a widespread, progressive condition that severely impacts growth and development of children. Chronic kidney disease is often more insidious in children than in adults, usually requiring a renal biopsy for diagnosis. Biopsy evaluation requires copious examination by trained pathologists, which can be tedious and prone to human error. In this study, we propose an artificial intelligence (AI) method to assist pathologists in accurate segmentation and classification of pediatric kidney structures, named as AI-based Pediatric Kidney Diagnosis (APKD).

resultsWe collected 2935 pediatric patients diagnosed with kidney disease for the development of APKD. The dataset comprised 93 932 histological structures annotated manually by three skilled nephropathologists. APKD scored an average accuracy of 94% for each kidney structure category, including 99% in the glomerulus. We found strong correlation between the model and manual detection in detected glomeruli (Spearman correlation coefficient r = 0.98, P < .001; intraclass correlation coefficient ICC = 0.98, 95% CI = 0.96-0.98). Compared to manual detection, APKD was approximately 5.5 times faster in segmenting glomeruli. Finally, we show how the pathological features extracted by APKD can identify focal abnormalities of the glomerular capillary wall to aid in the early diagnosis of pediatric kidney disease. AVAILABILITY AND IMPLEMENTATION: https://github.com/ChunyueFeng/Kidney-DataSet.

Indexed as

Artificial IntelligenceRenal Insufficiency, ChronicAdultChildHumansKidney

Identifiers

PMID38058211
PMCPMC10796177

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.