Evidence map›Paper›PMID 38054028›Full record

ArticleFrontiers in genetics2023

Genome-wide association study (GWAS) with high-throughput SNP chip DNA markers identified novel genetic factors for mesocotyl elongation and seedling emergence in rice (

Nkulu Rolly Kabange, Simon Alibu, Youngho Kwon, So-Myeong Lee, Ki-Won Oh, Jong-Hee Lee

Open access · goldAbstract read
In one paragraph

Article in Frontiers in genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Nkulu Rolly Kabange *Department of Southern Area Crop Science, National Institute of Crop Science, RDA, Miryang, Republic of Korea.
Simon Alibu *National Crops Resources Research Institute (NaCRRI), National Agricultural Research Organisation (NARO), Entebbe, Uganda.
Youngho KwonDepartment of Southern Area Crop Science, National Institute of Crop Science, RDA, Miryang, Republic of Korea.
So-Myeong LeeDepartment of Southern Area Crop Science, National Institute of Crop Science, RDA, Miryang, Republic of Korea.
Ki-Won OhDepartment of Southern Area Crop Science, National Institute of Crop Science, RDA, Miryang, Republic of Korea.
Jong-Hee LeeDepartment of Southern Area Crop Science, National Institute of Crop Science, RDA, Miryang, Republic of Korea.
Rural Development Administration · KRNational Agricultural Research Institute · UG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study employed a joint strategy high-density SNP Chip DNA markers and multiple Genome Association and Prediction Integrated Tool (GAPIT) models [(Bayesian-information and Linkage-disequilibrium Iteratively Nested Keyway (BLINK), Fixed and random model Circulating Probability Uniform (FarmCPU), General Linear Model (GLM), and Settlement of Mixed Linear Model (MLM) Under Progressively Exclusive Relationship (SUPER)], to investigate novel genetic factors controlling mesocotyl elongation and seedling emergence for direct-seeded rice. Genotype data (230,526 SNP Chip DNA makers) of 117 doubled haploid lines (derived from a cross between 93-11 (

Indexed as

emergenceGAPITGWASmesocotylSNP chip DNA markers

Identifiers

PMID38054028
PMCPMC10694456
OpenAlexW4388973180

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.