Evidence map›Paper›PMID 38053902›Full record

ArticleHeliyon2023

Bacterial microbiome and host inflammatory gene expression in foreskin tissue.

Brandon S Maust, Stefan Petkov, Carolina Herrera, Colin Feng, Bryan P Brown, Limakatso Lebina, Daniel Opoka, Andrew Ssemata, Natasha Pillay, Jennifer Serwanga and 13 more

Abstract read
In one paragraph

Article in Heliyon, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Understanding the Associations of Urogenital Microbiomes With Fertility and In Vitro Fertilization.American journal of reproductive immunology (New York, N.Y. : 1989) · 2025
    Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Brandon S MaustCenter for Global Infectious Disease Research, Seattle Children's Research Institute, Seattle, WA, 98109, USA.
Stefan PetkovDepartment of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Stockholm, 171 77, Sweden.
Carolina HerreraDepartment of Infectious Disease, Faculty of Medicine, Imperial College London, London, W2 1PG, UK.
Colin FengCenter for Global Infectious Disease Research, Seattle Children's Research Institute, Seattle, WA, 98109, USA.
Bryan P BrownCenter for Global Infectious Disease Research, Seattle Children's Research Institute, Seattle, WA, 98109, USA.
Limakatso LebinaPerinatal HIV Research Unit, University of the Witwatersrand, Johannesburg, 2000, South Africa.
Daniel OpokaMedical Research Council, Uganda Virus Research Institute, Entebbe, Uganda.
Andrew SsemataMedical Research Council, Uganda Virus Research Institute, Entebbe, Uganda.
Natasha PillayPerinatal HIV Research Unit, University of the Witwatersrand, Johannesburg, 2000, South Africa.
Jennifer SerwangaMedical Research Council, Uganda Virus Research Institute, Entebbe, Uganda.
Portia SeatlholoPerinatal HIV Research Unit, University of the Witwatersrand, Johannesburg, 2000, South Africa.
Patricia NamubiruMedical Research Council, Uganda Virus Research Institute, Entebbe, Uganda.
Geoffrey OdochMedical Research Council, Uganda Virus Research Institute, Entebbe, Uganda.
Susan MugabaMedical Research Council, Uganda Virus Research Institute, Entebbe, Uganda.
Thabiso SeiphetloInstitute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, 7925, South Africa.
Clive M GrayInstitute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, 7925, South Africa.
Pontiano KaleebuMedical Research Council, Uganda Virus Research Institute, Entebbe, Uganda.
Emily L WebbDepartment of Infectious Disease Epidemiology, London School of Hygiene & Tropical Medicine, London, WC1E 7HT, UK.
Neil MartinsonPerinatal HIV Research Unit, University of the Witwatersrand, Johannesburg, 2000, South Africa.
Francesca ChiodiDepartment of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Stockholm, 171 77, Sweden.
Julie FoxFaculty of Life Sciences & Medicine, School of Immunology & Microbial Sciences, Kings College, London, WC2R 2LS, UK.
Heather B JaspanCenter for Global Infectious Disease Research, Seattle Children's Research Institute, Seattle, WA, 98109, USA.
CHAPS team

Funding

ACADEMIC PEDIATRIC INFECTIOUS DISEASET32HD007233 · NICHD · SEATTLE CHILDREN'S HOSPITAL · PI KEVIN B URDAHL · 1985 to 2026
$6.7M
Penile viral and bacterial microbiome, inflammation and HIV susceptibilityR21AI165144 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI JASPAN, HEATHER BERYL · 2022 to 2023
$522k
Medical Research Council MC_UU_00027/5Medical Research Council MC_UU_00033/1NIAID NIH HHS R21 AI165144NICHD NIH HHS T32 HD007233
6 · The paper itself

Abstract

The penile epithelial microbiome remains underexplored. We sequenced human RNA and a segment of the bacterial 16S rRNA gene from the foreskin tissue of 144 adolescents from South Africa and Uganda collected during penile circumcision after receipt of 1-2 doses of placebo, emtricitabine + tenofovir disoproxil fumarate, or emtricitabine + tenofovir alafenamide to investigate the microbiome of foreskin tissue and its potential changes with antiretroviral use. We identified a large number of anaerobic species, including

Identifiers

PMID38053902
PMCPMC10694185

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.