Evidence map›Paper›PMID 38052806›Full record

ArticleNature communications2023

Prostate cancer genetic risk and associated aggressive disease in men of African ancestry.

Pamela X Y Soh, Naledi Mmekwa, Desiree C Petersen, Kazzem Gheybi, Smit van Zyl, Jue Jiang, Sean M Patrick, Raymond Campbell, Weerachai Jaratlerdseri, Shingai B A Mutambirwa and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
6.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 3 countries.

Pamela X Y SohAncestry and Health Genomics Laboratory, Charles Perkins Centre, School of Medical Sciences, Faculty of Medicine and Health, University of Sydney, Camperdown, NSW, 2006, Australia.ORCID 0000-0002-8485-6556
Naledi MmekwaSchool of Health Systems and Public Health, University of Pretoria, Pretoria, South Africa.
Desiree C PetersenSouth African Medical Research Council Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town, South Africa.ORCID 0000-0002-0817-2574
Kazzem GheybiAncestry and Health Genomics Laboratory, Charles Perkins Centre, School of Medical Sciences, Faculty of Medicine and Health, University of Sydney, Camperdown, NSW, 2006, Australia.
Smit van ZylFaculty of Health Sciences, University of Limpopo, Turfloop Campus, South Africa.
Jue JiangAncestry and Health Genomics Laboratory, Charles Perkins Centre, School of Medical Sciences, Faculty of Medicine and Health, University of Sydney, Camperdown, NSW, 2006, Australia.ORCID 0000-0003-0920-8310
Sean M PatrickSchool of Health Systems and Public Health, University of Pretoria, Pretoria, South Africa.
Raymond CampbellPhulukisa health Care, Pretoria, South Africa.
Weerachai JaratlerdseriAncestry and Health Genomics Laboratory, Charles Perkins Centre, School of Medical Sciences, Faculty of Medicine and Health, University of Sydney, Camperdown, NSW, 2006, Australia.ORCID 0000-0001-9100-1807
Shingai B A MutambirwaDepartment of Urology, Sefako Makgatho Health Science University, Dr George Mukhari Academic Hospital, Medunsa, South Africa.
M S Riana BornmanSchool of Health Systems and Public Health, University of Pretoria, Pretoria, South Africa.ORCID 0000-0003-3975-2333
Vanessa M HayesAncestry and Health Genomics Laboratory, Charles Perkins Centre, School of Medical Sciences, Faculty of Medicine and Health, University of Sydney, Camperdown, NSW, 2006, Australia. vanessa.hayes@sydney.edu.au.ORCID 0000-0002-4524-7280
The University of Sydney · AUUniversity of Pretoria · ZASefako Makgatho Health Sciences University · ZASouth African Medical Research Council · ZAUniversity of Limpopo · ZA

Funding

Cancer Association of South Africa (CANSA) BornmanDepartment of Health | National Health and Medical Research Council (NHMRC) APP1165762; APP2001098; APP2010551United States Department of Defense | United States Army | Army Medical Command | Congressionally Directed Medical Research Programs (CDMRP) PC200390; PC210168
6 · The paper itself

Abstract

African ancestry is a significant risk factor for prostate cancer and advanced disease. Yet, genetic studies have largely been conducted outside the context of Sub-Saharan Africa, identifying 278 common risk variants contributing to a multiethnic polygenic risk score, with rare variants focused on a panel of roughly 20 pathogenic genes. Based on this knowledge, we are unable to determine polygenic risk or differentiate prostate cancer status interrogating whole genome data for 113 Black South African men. To further assess for potentially functional common and rare variant associations, here we interrogate 247,780 exomic variants for 798 Black South African men using a case versus control or aggressive versus non-aggressive study design. Notable genes of interest include HCP5, RFX6 and H3C1 for risk, and MKI67 and KLF5 for aggressive disease. Our study highlights the need for further inclusion across the African diaspora to establish African-relevant risk models aimed at reducing prostate cancer health disparities.

Indexed as

Genetic Predisposition to DiseaseProstatic NeoplasmsBlack PeopleHumansMaleRisk Factors

Identifiers

PMID38052806
PMCPMC10697980
OpenAlexW4389339007

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.