Evidence map›Paper›PMID 38052804›Full record

ArticleNature communications2023

Secretory GFP reconstitution labeling of neighboring cells interrogates cell-cell interactions in metastatic niches.

Misa Minegishi, Takahiro Kuchimaru, Kaori Nishikawa, Takayuki Isagawa, Satoshi Iwano, Kei Iida, Hiromasa Hara, Shizuka Miura, Marika Sato, Shigeaki Watanabe and 17 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Review
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  4. Review
  5. Screening microorganisms with robust and stable protein expression and secretion capacity.Protein science : a publication of the Protein Society · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 11 institutions in 2 countries.

Misa MinegishiSchool of Life Science and Technology, Tokyo Institute of Technology, Kanagawa, Japan.
Takahiro KuchimaruRIKEN Cluster for Pioneering Research, Saitama, Japan. kuchimaru@jichi.ac.jp.ORCID 0000-0002-5355-3165
Kaori NishikawaRIKEN Cluster for Pioneering Research, Saitama, Japan.
Takayuki IsagawaCenter for Molecular Medicine, Jichi Medical University, Tochigi, Japan.
Satoshi IwanoRIKEN Center for Brain Science, Saitama, Japan.
Kei IidaFaculty of Science and Engineering, Kindai University, Osaka, Japan.ORCID 0000-0001-7130-8705
Hiromasa HaraCenter for Molecular Medicine, Jichi Medical University, Tochigi, Japan.
Shizuka MiuraMedical Institute of Bioregulation, Kyushu University, Fukuoka, Japan.
Marika SatoMediGear International Corporation, Kanagawa, Japan.
Shigeaki WatanabeMediGear International Corporation, Kanagawa, Japan.
Akifumi ShiomiRIKEN Cluster for Pioneering Research, Saitama, Japan.ORCID 0000-0002-9277-2301
Yo MabuchiGraduate School of Medicine, Juntendo University, Tokyo, Japan.ORCID 0000-0001-8008-3966
Hiroshi HamanaDepartment of Immunology, Faculty of Medicine, Academic Assembly, University of Toyama, Toyama, Japan.
Hiroyuki KishiDepartment of Immunology, Faculty of Medicine, Academic Assembly, University of Toyama, Toyama, Japan.ORCID 0000-0002-8740-5371
Tatsuyuki SatoCenter for Molecular Medicine, Jichi Medical University, Tochigi, Japan.ORCID 0000-0002-9229-9016
Daigo SawakiCenter for Molecular Medicine, Jichi Medical University, Tochigi, Japan.
Shigeru SatoCenter for Molecular Medicine, Jichi Medical University, Tochigi, Japan.
Yutaka HanazonoCenter for Molecular Medicine, Jichi Medical University, Tochigi, Japan.
Atsushi SuzukiMedical Institute of Bioregulation, Kyushu University, Fukuoka, Japan.ORCID 0000-0002-6347-5498
Takahide KohroData Science Center, Jichi Medical University, Tochigi, Japan.
Tetsuya KadonosonoSchool of Life Science and Technology, Tokyo Institute of Technology, Kanagawa, Japan.
Tomomi ShimogoriRIKEN Center for Brain Science, Saitama, Japan.
Atsushi MiyawakiRIKEN Center for Brain Science, Saitama, Japan.ORCID 0000-0002-0671-4376
Norihiko TakedaCenter for Molecular Medicine, Jichi Medical University, Tochigi, Japan.
Hirofumi ShintakuRIKEN Cluster for Pioneering Research, Saitama, Japan. hirofumi.shintaku@riken.jp.ORCID 0000-0002-9972-4222
Shinae Kizaka-KondohSchool of Life Science and Technology, Tokyo Institute of Technology, Kanagawa, Japan.ORCID 0000-0003-3085-5782
Satoshi NishimuraCenter for Molecular Medicine, Jichi Medical University, Tochigi, Japan.
Jichi Medical University · JPTokyo Institute of Technology · JPKyushu University · JPPioneer (United States) · USRIKEN · JPRIKEN Center for Brain Science · JPSaitama International Medical Center · JPUniversity of Toyama · JPFujita Health University · JPKindai University · JPUniversity of Miyazaki · JP

Funding

MEXT | Japan Society for the Promotion of Science (JSPS) 17H04989MEXT | Japan Society for the Promotion of Science (JSPS) 19H04814MEXT | Japan Society for the Promotion of Science (JSPS) 20H02862MEXT | JST | Core Research for Evolutional Science and Technology (CREST) 214660001
6 · The paper itself

Abstract

Cancer cells inevitably interact with neighboring host tissue-resident cells during the process of metastatic colonization, establishing a metastatic niche to fuel their survival, growth, and invasion. However, the underlying mechanisms in the metastatic niche are yet to be fully elucidated owing to the lack of methodologies for comprehensively studying the mechanisms of cell-cell interactions in the niche. Here, we improve a split green fluorescent protein (GFP)-based genetically encoded system to develop secretory glycosylphosphatidylinositol-anchored reconstitution-activated proteins to highlight intercellular connections (sGRAPHIC) for efficient fluorescent labeling of tissue-resident cells that neighbor on and putatively interact with cancer cells in deep tissues. The sGRAPHIC system enables the isolation of metastatic niche-associated tissue-resident cells for their characterization using a single-cell RNA sequencing platform. We use this sGRAPHIC-leveraged transcriptomic platform to uncover gene expression patterns in metastatic niche-associated hepatocytes in a murine model of liver metastasis. Among the marker genes of metastatic niche-associated hepatocytes, we identify Lgals3, encoding galectin-3, as a potential pro-metastatic factor that accelerates metastatic growth and invasion.

Indexed as

Liver NeoplasmsAnimalsCell CommunicationExtracellular MatrixGreen Fluorescent ProteinsHepatocytesHumansMiceGreen Fluorescent Proteins

Identifiers

PMID38052804
PMCPMC10697979
OpenAlexW4389333328

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.