Evidence map›Paper›PMID 38052429›Full record

ArticleFEMS microbiology reviews2023

Small proteins in Gram-positive bacteria.

Sabine Brantl, Inam Ul Haq

Open access · hybridAbstract read
In one paragraph

Article in FEMS microbiology reviews, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. The Cryptic Bacterial Microproteome.bioRxiv : the preprint server for biology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Sabine BrantlAG Bakteriengenetik, Matthias-Schleiden-Institut, Friedrich-Schiller-Universität Jena, Philosophenweg 12, Jena D-07743, Germany.ORCID 0000-0002-1448-3141
Inam Ul HaqAG Bakteriengenetik, Matthias-Schleiden-Institut, Friedrich-Schiller-Universität Jena, Philosophenweg 12, Jena D-07743, Germany.
Friedrich Schiller University Jena · DE

Funding

Deutsche Forschungsgemeinschaft BR1552/14-1
6 · The paper itself

Abstract

Small proteins comprising less than 100 amino acids have been often ignored in bacterial genome annotations. About 10 years ago, focused efforts started to investigate whole peptidomes, which resulted in the discovery of a multitude of small proteins, but only a number of them have been characterized in detail. Generally, small proteins can be either membrane or cytosolic proteins. The latter interact with larger proteins, RNA or even metal ions. Here, we summarize our current knowledge on small proteins from Gram-positive bacteria with a special emphasis on the model organism Bacillus subtilis. Our examples include membrane-bound toxins of type I toxin-antitoxin systems, proteins that block the assembly of higher order structures, regulate sporulation or modulate the RNA degradosome. We do not consider antimicrobial peptides. Furthermore, we present methods for the identification and investigation of small proteins.

Indexed as

AntitoxinsBacterial ToxinsBacillus subtilisBacterial ProteinsGenome, BacterialAntitoxinsBacterial ProteinsBacterial ToxinsBacillus subtilisRNA chaperonesRNA degradosomesmall proteinsporulationSR1PSR7Ptoxins of type I toxin–antitoxin systems

Identifiers

PMID38052429
PMCPMC10730256
OpenAlexW4389397007

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.