Evidence map›Paper›PMID 38051754›Full record

ArticlePLoS genetics2023

Transcriptomic and functional screening of weapon formation genes implies significance of cell adhesion molecules and female-biased genes in broad-horned flour beetle.

Miyu Sugiyama, Takane Ozawa, Kunihiro Ohta, Kensuke Okada, Teruyuki Niimi, Katsushi Yamaguchi, Shuji Shigenobu, Yasukazu Okada

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Miyu SugiyamaDepartment of Biological Sciences, Tokyo Metropolitan University, Hachioji, Tokyo, Japan.
Takane OzawaDepartment of Life Sciences, The University of Tokyo, Komaba, Tokyo, Japan.
Kunihiro OhtaDepartment of Life Sciences, The University of Tokyo, Komaba, Tokyo, Japan.
Kensuke OkadaFaculty of Environmental, Life, Natural Science and Technology, Okayama University, Tsushima-naka, Okayama, Japan.
Teruyuki NiimiNational Institute for Basic Biology, Nishigonaka, Myodaiji, Okazaki, Japan.
Katsushi YamaguchiNational Institute for Basic Biology, Nishigonaka, Myodaiji, Okazaki, Japan.
Shuji ShigenobuNational Institute for Basic Biology, Nishigonaka, Myodaiji, Okazaki, Japan.
Yasukazu OkadaDepartment of Biological Sciences, Tokyo Metropolitan University, Hachioji, Tokyo, Japan.ORCID 0000-0003-4528-2980
National Institute for Basic Biology · JPTokyo Metropolitan University · JPTokyo University of the Arts · JPOkayama University of Science · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

For understanding the evolutionary mechanism of sexually selected exaggerated traits, it is essential to uncover its molecular basis. By using broad-horned flour beetle that has male-specific exaggerated structures (mandibular horn, head horn and gena enlargement), we investigated the transcriptomic and functional characters of sex-biased genes. Comparative transcriptome of male vs. female prepupal heads elucidated 673 sex-biased genes. Counter-intuitively, majority of them were female-biased (584 genes), and GO enrichment analysis showed cell-adhesion molecules were frequently female-biased. This pattern motivated us to hypothesize that female-biased transcripts (i.e. the transcripts diminished in males) may play a role in outgrowth formation. Potentially, female-biased genes may act as suppressors of weapon structure. In order to test the functionality of female-biased genes, we performed RNAi-mediated functional screening for top 20 female-biased genes and 3 genes in the most enriched GO term (cell-cell adhesion, fat1/2/3, fat4 and dachsous). Knockdown of one transcription factor, zinc finger protein 608 (zfp608) resulted in the formation of male-like gena in females, supporting the outgrowth suppression function of this gene. Similarly, knockdown of fat4 induced rudimental, abnormal mandibular horn in female. fat1/2/3RNAi, fat4RNAi and dachsousRNAi males exhibited thick and/or short mandibular horns and legs. These cell adhesion molecules are known to regulate tissue growth direction and known to be involved in the weapon formation in Scarabaeoidea beetles. Functional evidence in phylogenetically distant broad-horned flour beetle suggest that cell adhesion genes are repeatedly deployed in the acquisition of outgrowth. In conclusion, this study clarified the overlooked functions of female-biased genes in weapon development.

Indexed as

ColeopteraAnimalsBiological EvolutionCell Adhesion MoleculesFemaleGene Expression ProfilingMaleSex CharacteristicsTranscription FactorsTranscriptomeCell Adhesion MoleculesTranscription Factors

Identifiers

PMID38051754
PMCPMC10723671
OpenAlexW4389331693

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.