Evidence map›Paper›PMID 38051612›Full record

ArticleIEEE journal of biomedical and health informatics2024

COVID-19 Detection From Respiratory Sounds With Hierarchical Spectrogram Transformers.

Idil Aytekin, Onat Dalmaz, Kaan Gonc, Haydar Ankishan, Emine Ulku Saritas, Ulas Bagci, Haydar Celik, Tolga Cukur

Open access · greenAbstract read
In one paragraph

Article in IEEE journal of biomedical and health informatics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
7.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 27 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Idil Aytekin
Onat Dalmaz
Kaan Gonc
Haydar Ankishan
Emine Ulku Saritas
Ulas Bagci
Haydar Celik
Tolga Cukur
Bilkent University · TRAnkara University · TRChildren's National · USNorthwestern University · US

Funding

Cyst-X: Interpretable Deep Learning Based Risk Stratification of Pancreatic Cystic TumorsR01CA246704 · NCI · UNIVERSITY OF CENTRAL FLORIDA · PI BAGCI, ULAS · 2020 to 2024
$2.4M
Predicting Post-Covid Pulmonary Fibrosis with Explainable Deep Learning and Optimal Biomarker DiscoveryR01HL171376 · NHLBI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Ulas Bagci, Sachin Jambawalikar · 2024 to 2026
$2.1M
Radiologist-Centered Artificial Intelligence (RCAI) for Lung Cancer Screening and DiagnosisR01CA240639 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI BAGCI, ULAS · 2020 to 2024
$2.0M
NCI NIH HHS R01 CA240639NCI NIH HHS R01 CA246704NHLBI NIH HHS R01 HL171376
6 · The paper itself

Abstract

Monitoring of prevalent airborne diseases such as COVID-19 characteristically involves respiratory assessments. While auscultation is a mainstream method for preliminary screening of disease symptoms, its utility is hampered by the need for dedicated hospital visits. Remote monitoring based on recordings of respiratory sounds on portable devices is a promising alternative, which can assist in early assessment of COVID-19 that primarily affects the lower respiratory tract. In this study, we introduce a novel deep learning approach to distinguish patients with COVID-19 from healthy controls given audio recordings of cough or breathing sounds. The proposed approach leverages a novel hierarchical spectrogram transformer (HST) on spectrogram representations of respiratory sounds. HST embodies self-attention mechanisms over local windows in spectrograms, and window size is progressively grown over model stages to capture local to global context. HST is compared against state-of-the-art conventional and deep-learning baselines. Demonstrations on crowd-sourced multi-national datasets indicate that HST outperforms competing methods, achieving over 90% area under the receiver operating characteristic curve (AUC) in detecting COVID-19 cases.

Indexed as

COVID-19Respiratory SoundsAuscultationCoughElectric Power SuppliesHumans

Identifiers

PMID38051612
PMCPMC11658170
OpenAlexW4389332151

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.