Evidence map›Paper›PMID 38051594›Full record

ArticleThe Journal of clinical investigation2023

DNA methylation-mediated Rbpjk suppression protects against fracture nonunion caused by systemic inflammation.

Ding Xiao, Liang Fang, Zhongting Liu, Yonghua He, Jun Ying, Haocheng Qin, Aiwu Lu, Meng Shi, Tiandao Li, Bo Zhang and 4 more

Open access · goldAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 11 citations in OpenAlex.

  1. Hyperprogressive disease in carcinoma induced by immune checkpoint inhibitor therapy: a systematic review.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2026
    Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 3 countries.

Ding XiaoDepartment of Orthopaedic Surgery, School of Medicine, Washington University, St. Louis, Missouri, USA.
Liang FangDepartment of Orthopaedic Surgery, School of Medicine, Washington University, St. Louis, Missouri, USA.
Zhongting LiuDepartment of Mechanical Engineering & Materials Sciences, School of Engineering and.
Yonghua HeDepartment of Orthopaedic Surgery, School of Medicine, Washington University, St. Louis, Missouri, USA.
Jun YingDepartment of Orthopaedic Surgery, School of Medicine, Washington University, St. Louis, Missouri, USA.
Haocheng QinDepartment of Orthopaedic Surgery, School of Medicine, Washington University, St. Louis, Missouri, USA.
Aiwu LuDepartment of Orthopaedic Surgery, School of Medicine, Washington University, St. Louis, Missouri, USA.
Meng ShiDepartment of Orthopaedic Surgery, School of Medicine, Washington University, St. Louis, Missouri, USA.
Tiandao LiDepartment of Developmental Biology, Center of Regenerative Medicine, Washington University, St. Louis, Missouri, USA.
Bo ZhangDepartment of Developmental Biology, Center of Regenerative Medicine, Washington University, St. Louis, Missouri, USA.
Jianjun GuanDepartment of Mechanical Engineering & Materials Sciences, School of Engineering and.
Cuicui WangDepartment of Orthopaedic Surgery, School of Medicine, Washington University, St. Louis, Missouri, USA.
Yousef Abu-AmerDepartment of Orthopaedic Surgery, School of Medicine, Washington University, St. Louis, Missouri, USA.
Jie ShenDepartment of Orthopaedic Surgery, School of Medicine, Washington University, St. Louis, Missouri, USA.
Washington University in St. Louis · USCentral South University · CN

Funding

Resource Based Center for Musculoskeletal Biology and Medicine (Overall Application)P30AR074992 · NIAMS · WASHINGTON UNIVERSITY · PI MATTHEW J SILVA · 2019 to 2026
$6.8M
Metabolic Regulation of Articular Cartilage and Joint HomeostasisR01AR079100 · NIAMS · WASHINGTON UNIVERSITY · PI O'KEEFE, REGIS J, SHEN, JIE · 2021 to 2025
$2.9M
Targeting angiogenesis for fracture nonunion treatment under inflammatory diseasesR01AR077616 · NIAMS · WASHINGTON UNIVERSITY · PI GUAN, JIANJUN, SHEN, JIE · 2020 to 2025
$2.7M
Epigenetic Regulation of Bone Regeneration in Inflammatory DiseaseR01AR075860 · NIAMS · WASHINGTON UNIVERSITY · PI SHEN, JIE · 2019 to 2024
$2.6M
Transcriptional regulation of domesticated transposable elements-derived promoters in human genomeR35GM142917 · NIGMS · WASHINGTON UNIVERSITY · PI ZHANG, BO ABER · 2021 to 2025
$1.9M
Mechanisms of Physiologic and Pathologic OsteoclastogenesisR01AR072623 · NIAMS · WASHINGTON UNIVERSITY · PI ABU-AMER, YOUSEF · 2018 to 2022
$1.7M
Stem cell therapy for fracture nonunion under inflammatory diseasesR21AR077226 · NIAMS · WASHINGTON UNIVERSITY · PI GUILAK, FARSHID, SHEN, JIE · 2020 to 2021
$376k
IN VIVO MICROCT SYSTEMS10RR023660 · NCRR · WASHINGTON UNIVERSITY · PI SILVA, MATTHEW J. · 2007 to 2007
$317k
NCRR NIH HHS S10 RR023660NIAMS NIH HHS P30 AR074992NIAMS NIH HHS R01 AR072623NIAMS NIH HHS R01 AR075860NIAMS NIH HHS R01 AR077616NIAMS NIH HHS R01 AR079100NIAMS NIH HHS R21 AR077226NIGMS NIH HHS R35 GM142917
6 · The paper itself

Abstract

Challenging skeletal repairs are frequently seen in patients experiencing systemic inflammation. To tackle the complexity and heterogeneity of the skeletal repair process, we performed single-cell RNA sequencing and revealed that progenitor cells were one of the major lineages responsive to elevated inflammation and this response adversely affected progenitor differentiation by upregulation of Rbpjk in fracture nonunion. We then validated the interplay between inflammation (via constitutive activation of Ikk2, Ikk2ca) and Rbpjk specifically in progenitors by using genetic animal models. Focusing on epigenetic regulation, we identified Rbpjk as a direct target of Dnmt3b. Mechanistically, inflammation decreased Dnmt3b expression in progenitor cells, consequently leading to Rbpjk upregulation via hypomethylation within its promoter region. We also showed that Dnmt3b loss-of-function mice phenotypically recapitulated the fracture repair defects observed in Ikk2ca-transgenic mice, whereas Dnmt3b-transgenic mice alleviated fracture repair defects induced by Ikk2ca. Moreover, Rbpjk ablation restored fracture repair in both Ikk2ca mice and Dnmt3b loss-of-function mice. Altogether, this work elucidates a common mechanism involving a NF-κB/Dnmt3b/Rbpjk axis within the context of inflamed bone regeneration. Building on this mechanistic insight, we applied local treatment with epigenetically modified progenitor cells in a previously established mouse model of inflammation-mediated fracture nonunion and showed a functional restoration of bone regeneration under inflammatory conditions through an increase in progenitor differentiation potential.

Indexed as

DNA MethylationFractures, BoneAnimalsDNA (Cytosine-5-)-MethyltransferasesEpigenesis, GeneticHumansImmunoglobulin J Recombination Signal Sequence-Binding ProteinInflammationMiceMice, TransgenicDNA (Cytosine-5-)-MethyltransferasesImmunoglobulin J Recombination Signal Sequence-Binding ProteinRbpj protein, mouseBone BiologyBone diseaseEpigeneticsGene therapyStem cells

Identifiers

PMID38051594
PMCPMC10849763
OpenAlexW4389334748

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.