Evidence map›Paper›PMID 38051585›Full record

ArticleThe Journal of clinical investigation2023

ACSS2 gene variants determine kidney disease risk by controlling de novo lipogenesis in kidney tubules.

Dhanunjay Mukhi, Lingzhi Li, Hongbo Liu, Tomohito Doke, Lakshmi P Kolligundla, Eunji Ha, Konstantin Kloetzer, Amin Abedini, Sarmistha Mukherjee, Junnan Wu and 9 more

Open access · goldAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
7.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 36 citations in OpenAlex.

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  13. Renal tubular epithelial IGFBP7 interacts with PKM2 to drive renal lipid accumulation and fibrosis.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors at 4 institutions in 3 countries.

Dhanunjay MukhiRenal Electrolyte and Hypertension Division.
Lingzhi LiRenal Electrolyte and Hypertension Division.
Hongbo LiuRenal Electrolyte and Hypertension Division.
Tomohito DokeRenal Electrolyte and Hypertension Division.
Lakshmi P KolligundlaRenal Electrolyte and Hypertension Division.
Eunji HaRenal Electrolyte and Hypertension Division.
Konstantin KloetzerRenal Electrolyte and Hypertension Division.
Amin AbediniRenal Electrolyte and Hypertension Division.
Sarmistha MukherjeeInstitutes for Diabetes, Obesity and Metabolism.
Junnan WuRenal Electrolyte and Hypertension Division.
Poonam DhillonRenal Electrolyte and Hypertension Division.
Hailong HuRenal Electrolyte and Hypertension Division.
Dongyin GuanDivision of Endocrinology, Baylor College of Medicine, Houston, Texas, USA.
Katsuhiko FunaiDiabetes and Metabolism Research Center, University of Utah, Salt Lake City, Utah, USA.
Kahealani UeharaInstitutes for Diabetes, Obesity and Metabolism.
Paul M TitchenellInstitutes for Diabetes, Obesity and Metabolism.
Joseph A BaurInstitutes for Diabetes, Obesity and Metabolism.
Kathryn E WellenDepartment of Cancer Biology.
Katalin SusztakRenal Electrolyte and Hypertension Division.
Diabetes Australia · AUBaylor College of Medicine · USCancer Research Institute of the Slovak Academy of Sciences · SKUniversity of Utah · US

Funding

VIRAL VECTOR COREP30DK019525 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI DOUGLAS J EPSTEIN · 1986 to 2026
$48.3M
Role of the Notch Pathway in Kidney InjuryR01DK076077 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI KATALIN SUSZTAK · 2007 to 2026
$8.0M
Epigenetics of Chronic Kidney DiseaseR01DK087635 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI KATALIN SUSZTAK · 2009 to 2026
$7.0M
Targeting NAD Metabolism to Improve Glucose Homeostasis in Obesity and AgingR01DK098656 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI Joseph A. Baur · 2013 to 2026
$6.1M
APOL1 associated kidney diseaseR01DK105821 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI SUSZTAK, KATALIN · 2016 to 2024
$4.6M
PE methylation in skeletal muscle energy efficiencyR01DK107397 · NIDDK · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI FUNAI, KATSUHIKO · 2017 to 2025
$3.8M
LOOH-induced muscle atrophy with ageR01AG074535 · NIA · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Micah J Drummond, Katsuhiko Funai · 2022 to 2026
$3.0M
Epigenetic drivers and biomarkers of diabetic kidney diseaseDP3DK108220 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI SUSZTAK, KATALIN · 2015 to 2015
$2.4M
Regulation of Skeletal Muscle Metabolism by Insulin SignalingR01DK123252 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI TITCHENELL, PAUL MICHAEL · 2020 to 2024
$2.2M
Acetyl-CoA metabolism and nutrient sensing in adipocytesR01DK116005 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI GUERTIN, DAVID A, WELLEN, KATHRYN ELAINE · 2019 to 2022
$2.0M
The role of cytosolic nucleotide sensors in inflammatory fibrosisR01DK132630 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI SUSZTAK, KATALIN · 2022 to 2025
$2.0M
Lands cycle and skeletal muscle insulin actionR01DK127979 · NIDDK · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI FUNAI, KATSUHIKO · 2022 to 2025
$1.9M
NIA NIH HHS R01 AG074535NIDDK NIH HHS DP3 DK108220NIDDK NIH HHS K01 DK125602NIDDK NIH HHS P30 DK019525NIDDK NIH HHS R01 DK076077NIDDK NIH HHS R01 DK087635NIDDK NIH HHS R01 DK098656NIDDK NIH HHS R01 DK105821NIDDK NIH HHS R01 DK107397NIDDK NIH HHS R01 DK116005NIDDK NIH HHS R01 DK123252NIDDK NIH HHS R01 DK125497NIDDK NIH HHS R01 DK127979NIDDK NIH HHS R01 DK132630NIGMS NIH HHS R01 GM144613
6 · The paper itself

Abstract

Worldwide, over 800 million people are affected by kidney disease, yet its pathogenesis remains elusive, hindering the development of novel therapeutics. In this study, we used kidney-specific expression of quantitative traits and single-nucleus open chromatin analysis to show that genetic variants linked to kidney dysfunction on chromosome 20 target the acyl-CoA synthetase short-chain family 2 (ACSS2). By generating ACSS2-KO mice, we demonstrated their protection from kidney fibrosis in multiple disease models. Our analysis of primary tubular cells revealed that ACSS2 regulated de novo lipogenesis (DNL), causing NADPH depletion and increasing ROS levels, ultimately leading to NLRP3-dependent pyroptosis. Additionally, we discovered that pharmacological inhibition or genetic ablation of fatty acid synthase safeguarded kidney cells against profibrotic gene expression and prevented kidney disease in mice. Lipid accumulation and the expression of genes related to DNL were elevated in the kidneys of patients with fibrosis. Our findings pinpoint ACSS2 as a critical kidney disease gene and reveal the role of DNL in kidney disease.

Indexed as

Acetate-CoA LigaseKidney DiseasesLipogenesisAnimalsFibrosisHumansKidneyKidney TubulesMiceAcetate-CoA LigaseACSS2 protein, humanChronic kidney diseaseFibrosisGeneticsNephrology

Identifiers

PMID38051585
PMCPMC10866669
OpenAlexW4389334332

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.