Evidence map›Paper›PMID 38049764›Full record

ArticleBMC genomics2023

Genome characterization and taxonomy of Actinomyces acetigenes sp. nov., and Actinomyces stomatis sp. nov., previously isolated from the human oral cavity.

Xuechen Tian, Wee Fei Aaron Teo, Wei Yee Wee, Yixin Yang, Halah Ahmed, Nicholas S Jakubovics, Siew Woh Choo, Geok Yuan Annie Tan

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 3 countries.

Xuechen TianInstitute of Biological Sciences, Faculty of Science, Universiti Malaya, 50603, Kuala Lumpur, Malaysia.
Wee Fei Aaron TeoInstitute of Biological Sciences, Faculty of Science, Universiti Malaya, 50603, Kuala Lumpur, Malaysia.
Wei Yee WeeSchool of Science, Monash University Malaysia, Jalan Lagoon Selatan, Bandar Sunway, Subang Jaya, Selangor, 46150, Malaysia.
Yixin YangCollege of Science, Mathematics and Technology, Wenzhou-Kean University, 88 Daxue Road, Ouhai, Wenzhou, Zhejiang Province, 325060, China.
Halah AhmedSchool of Dental Sciences, Faculty of Medical Sciences, Newcastle University, Framlington Place, Newcastle Upon Tyne, NE2 4BW, UK.
Nicholas S JakubovicsSchool of Dental Sciences, Faculty of Medical Sciences, Newcastle University, Framlington Place, Newcastle Upon Tyne, NE2 4BW, UK. nick.jakubovics@newcastle.ac.uk.
Siew Woh ChooCollege of Science, Mathematics and Technology, Wenzhou-Kean University, 88 Daxue Road, Ouhai, Wenzhou, Zhejiang Province, 325060, China. cwoh@wku.edu.cn.
Geok Yuan Annie TanInstitute of Biological Sciences, Faculty of Science, Universiti Malaya, 50603, Kuala Lumpur, Malaysia. gyatan@um.edu.my.
University of Malaya · MYWenzhou-Kean University · CNMonash University Malaysia · MYNewcastle Dental Hospital · GBNewcastle University · GB

Funding

The high-level talent recruitment program for academic and research platform construction from Wenzhou-Kean University 5000105Wenzhou Municipal Key Laboratory for Applied Biomedical and the Biopharmaceutical Informatics WB20211227000125Zhejiang Bioinformatics International Science and Technology Cooperation Center at Wenzhou-Kean University WB20210429000008
6 · The paper itself

Abstract

backgroundActinomyces strains are commonly found as part of the normal microflora on human tissue surfaces, including the oropharynx, gastrointestinal tract, and female genital tract. Understanding the diversity and characterization of Actinomyces species is crucial for human health, as they play an important role in dental plaque formation and biofilm-related infections. Two Actinomyces strains ATCC 49340

resultsTo investigate the genomic properties and taxonomic status of these strains, we employed both 16S rRNA Sanger sequencing and whole-genome sequencing using the Illumina HiSeq X Ten platform with PE151 (paired-end) sequencing. Our analyses revealed that the draft genome of Actinomyces acetigenes ATCC 49340

conclusionThis study supports the classification of strains ATCC 49340

Indexed as

ActinomycesMouthBacterial Typing TechniquesDNADNA, BacterialFatty AcidsFemaleHumansNucleic Acid HybridizationNucleotidesPhylogenyRNA, Ribosomal, 16SSequence Analysis, DNADNADNA, BacterialFatty AcidsNucleotidesRNA, Ribosomal, 16SActinomyces acetigenesActinomyces stomatisGenome analysisNovel speciesOral cavity

Identifiers

PMID38049764
PMCPMC10696680
OpenAlexW4389305728

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.