Evidence map›Paper›PMID 38049685›Full record

ArticleBiochemical genetics2024

The Characterization of Mitochondrial Genome of Spotted Pond Turtle (Geoclemys hamiltonii).

Guangwei Ma, Ziye Zuo, Xiaohong Zhou, Xiaofei Zhai, Jichao Wang

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Article in Biochemical genetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

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1citing papers in PubMed
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1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

5 authors.

Guangwei Ma *Key Laboratory of Tropical Animal and Plant Ecology of Hainan Province, Ministry of Education Key Laboratory for Ecology of Tropical Islands, College of Life Sciences, Hainan Normal University, Haikou, China.
Ziye Zuo *Key Laboratory of Tropical Animal and Plant Ecology of Hainan Province, Ministry of Education Key Laboratory for Ecology of Tropical Islands, College of Life Sciences, Hainan Normal University, Haikou, China.
Xiaohong ZhouKey Laboratory of Tropical Animal and Plant Ecology of Hainan Province, Ministry of Education Key Laboratory for Ecology of Tropical Islands, College of Life Sciences, Hainan Normal University, Haikou, China.
Xiaofei ZhaiKey Laboratory of Tropical Animal and Plant Ecology of Hainan Province, Ministry of Education Key Laboratory for Ecology of Tropical Islands, College of Life Sciences, Hainan Normal University, Haikou, China.
Jichao WangKey Laboratory of Tropical Animal and Plant Ecology of Hainan Province, Ministry of Education Key Laboratory for Ecology of Tropical Islands, College of Life Sciences, Hainan Normal University, Haikou, China. wjc@hainnu.edu.cn.

Funding

Education Department of Hainan Province Hnky2021-25
6 · The paper itself

Abstract

The spotted pond turtle Geoclemys hamiltonii (Gray, 1830) is widely distributed in the Indus, Ganges, and Brahmaputra river basins. In this study, the complete mitochondrial genome (mitogenome) of G. hamiltonii was sequenced using the next-generation sequencing (NGS) and Sanger sequencing, and the essential characteristics, gene arrangement, and phylogenetic relationship were analyzed. The results showed that the G. hamiltonii mitogenome was 16,505 bp in length (A: 33.6%, C: 27.1%, G: 13.4%, T: 25.8%) and consisted of 22 tRNAs, 13 protein-coding genes, two ribosomal RNA genes, and a non-coding control region (GenBank accession ON243873). The genome composition of G. hamiltonii presented a slight A + T bias (59.4%), and showed a positive AT skew (0.131) and a negative GC skew (- 0.338). All tRNAs had the typical clover structure, except trnS1 (GCT). The gene order of the G. hamiltonii mitogenome was the same as other Geoemydidae mitogenomes. A phylogenetic analysis based on the complete mitogenome indicated that the G. hamiltonii grouped independently of other species in the family Geoemydidae, supporting the species' placement in the monotypic genus Geoclemys. Our results describe a novel genome at the species level. As the first complete mitogenome of G. hamiltonii, it provided valuable molecular information for phylogenetic and conservation genetics analyses of G. hamiltonii.

Indexed as

Genome, MitochondrialPhylogenyTurtlesAnimalsBase CompositionHigh-Throughput Nucleotide SequencingRNA, RibosomalRNA, TransferRNA, RibosomalRNA, TransferEndangered turtleGeoclemys hamiltoniiMitogenomePhylogenetic analysis

Identifiers

PMID38049685

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