Evidence map›Paper›PMID 38049566›Full record

ArticleNature structural & molecular biology2023

Rational optimization of a transcription factor activation domain inhibitor.

Shaon Basu, Paula Martínez-Cristóbal, Marta Frigolé-Vivas, Mireia Pesarrodona, Michael Lewis, Elzbieta Szulc, C Adriana Bañuelos, Carolina Sánchez-Zarzalejo, Stasė Bielskutė, Jiaqi Zhu and 27 more

Open access · hybridAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
9.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 62 citations in OpenAlex.

  1. Review
  2. A Spatiotemporal Atlas of the Androgen Receptor Proximal Interactome.bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Article
  5. Condensates as Conformation Editors of Disordered Client Proteins.Journal of the American Chemical Society · 2026
    Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Biomolecular Condensates Dictate the Folding Landscape of Proteins.bioRxiv : the preprint server for biology · 2026
    Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

37 authors at 9 institutions in 4 countries.

Shaon Basu *Department of Genome Regulation, Max Planck Institute for Molecular Genetics, Berlin, Germany.ORCID 0000-0003-2648-4827
Paula Martínez-Cristóbal *Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, Spain.ORCID 0000-0002-8464-3884
Marta Frigolé-VivasInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, Spain.
Mireia PesarrodonaInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, Spain.
Michael LewisInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, Spain.
Elzbieta SzulcInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, Spain.
C Adriana BañuelosGenome Sciences, BC Cancer and Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, Canada.
Carolina Sánchez-ZarzalejoInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, Spain.ORCID 0000-0002-7059-5658
Stasė BielskutėInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, Spain.
Jiaqi ZhuDartmouth College, Department of Chemistry, Hanover, NH, USA.
Karina Pombo-GarcíaMax Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany.ORCID 0000-0002-2077-5909
Carla Garcia-CabauInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, Spain.ORCID 0000-0003-0533-0642
Levente ZodiInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, Spain.
Hannes DockxNuage Therapeutics, Barcelona, Spain.
Jordann SmakRadiation Oncology Branch, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD, USA.
Harpreet KaurRadiation Oncology Branch, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD, USA.ORCID 0000-0003-0421-8341
Cristina BatlleInstitut de Biotecnologia i Biomedicina and Departament de Bioquímica i Biologia Molecular, Universitat Autònoma de Barcelona, Bellaterra, Spain.
Borja MateosInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, Spain.ORCID 0000-0002-0310-4943
Mateusz BiesagaInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, Spain.ORCID 0000-0001-6443-1270
Albert EscobedoInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, Spain.ORCID 0000-0001-7295-5111
Lídia BardiaInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, Spain.
Xavier VerdaguerInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, Spain.
Alessandro RuffoniInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, Spain.ORCID 0000-0001-8617-2548
Nasrin R MawjiGenome Sciences, BC Cancer and Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, Canada.
Jun WangGenome Sciences, BC Cancer and Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, Canada.
Jon K ObstGenome Sciences, BC Cancer and Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, Canada.
Teresa TamGenome Sciences, BC Cancer and Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, Canada.
Isabelle Brun-HeathInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, Spain.ORCID 0000-0002-5828-0020
Salvador VenturaInstitut de Biotecnologia i Biomedicina and Departament de Bioquímica i Biologia Molecular, Universitat Autònoma de Barcelona, Bellaterra, Spain.ORCID 0000-0002-9652-6351
David MeierhoferMax Planck Institute for Molecular Genetics, Mass Spectrometry Facility, Berlin, Germany.ORCID 0000-0002-0170-868X
Jesús GarcíaInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, Spain.ORCID 0000-0003-2961-9790
Paul RobustelliDartmouth College, Department of Chemistry, Hanover, NH, USA.ORCID 0000-0002-9282-8993
Travis H StrackerRadiation Oncology Branch, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD, USA.ORCID 0000-0002-8650-2081
Marianne D SadarGenome Sciences, BC Cancer and Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, Canada. msadar@bcgsc.ca.ORCID 0000-0003-0599-9215
Antoni RieraInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, Spain. antoni.riera@irbbarcelona.org.ORCID 0000-0001-7142-7675
Denes HniszDepartment of Genome Regulation, Max Planck Institute for Molecular Genetics, Berlin, Germany. hnisz@molgen.mpg.de.ORCID 0000-0002-6256-1693
Xavier SalvatellaInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, Spain. xavier.salvatella@irbbarcelona.org.ORCID 0000-0002-8371-4185
Institute for Research in Biomedicine · ESUniversity of British Columbia · CAMax Planck Institute for Molecular Genetics · DENational Cancer Institute · USDartmouth College · USUniversitat Autònoma de Barcelona · ESHighlight Therapeutics (Spain) · ESInstitució Catalana de Recerca i Estudis Avançats · ESMax Planck Institute of Molecular Cell Biology and Genetics · DE

Funding

Translational Engineering in Cancer (TEC)P30CA023108 · NCI · DARTMOUTH COLLEGE · PI Fred W Kolling IV · 1985 to 2026
$91.3M
Novel compounds that inhibit transactivation of N-terminal domain of the androgenR01CA105304 · NCI · PROVINCIAL HEALTH SERVICES AUTHORITY · PI SADAR, MARIANNE D · 2004 to 2021
$3.7M
Identification of radiosensitizers for prostate cancerZIABC012012 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI STRACKER, TRAVIS · 2020 to 2023
$2.9M
Characterizing the binding mechanisms of castration-resistant prostate cancer therapeutics to the intrinsically disordered N-terminal domain of the androgen receptorR35GM142750 · NIGMS · DARTMOUTH COLLEGE · PI Paul Robustelli · 2021 to 2026
$2.4M
Structure, function, and application of novel antagonists of the intrinsically disordered androgen receptor amino-terminal domain as imaging agents and therapeuticsR01CA255044 · NCI · PROVINCIAL HEALTH SERVICES AUTHORITY · PI SADAR, MARIANNE D · 2021 to 2025
$2.2M
Intramural NIH HHS ZIA BC012012NCI NIH HHS P30 CA023108NCI NIH HHS R01 CA105304NCI NIH HHS R01 CA255044NIGMS NIH HHS R35 GM142750
6 · The paper itself

Abstract

Transcription factors are among the most attractive therapeutic targets but are considered largely 'undruggable' in part due to the intrinsically disordered nature of their activation domains. Here we show that the aromatic character of the activation domain of the androgen receptor, a therapeutic target for castration-resistant prostate cancer, is key for its activity as transcription factor, allowing it to translocate to the nucleus and partition into transcriptional condensates upon activation by androgens. On the basis of our understanding of the interactions stabilizing such condensates and of the structure that the domain adopts upon condensation, we optimized the structure of a small-molecule inhibitor previously identified by phenotypic screening. The optimized compounds had more affinity for their target, inhibited androgen-receptor-dependent transcriptional programs, and had an antitumorigenic effect in models of castration-resistant prostate cancer in cells and in vivo. These results suggest that it is possible to rationally optimize, and potentially even to design, small molecules that target the activation domains of oncogenic transcription factors.

Indexed as

Prostatic NeoplasmsProstatic Neoplasms, Castration-ResistantAndrogensCell Line, TumorHumansMaleProtein DomainsReceptors, AndrogenTranscription FactorsAndrogensReceptors, AndrogenTranscription Factors

Identifiers

PMID38049566
PMCPMC10716049
OpenAlexW4389312307

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.