ArticleJournal of chemical information and modeling2023
Applying Large Graph Neural Networks to Predict Transition Metal Complex Energies Using the tmQM_wB97MV Data Set.
Article in Journal of chemical information and modeling, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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14 citing papers in PubMed.
- AI-EXAFS: Physics-Informed Prediction of EXAFS from Atomic Structure.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026Article
- BOS-TMC Data Set: DFT Properties of 159k Experimentally Characterized Transition Metal Complexes Spanning Multiple Charge and Spin States.Journal of chemical information and modeling · 2026Article
- tmQM-RDF Data Set: A Knowledge Graph Representing Transition Metal Complexes.Journal of chemical information and modeling · 2026Article
- The Future of Foundation Machine Learning Potentials and DFT in Homogeneous Catalysis: Competition or Synergy?Chemistry (Weinheim an der Bergstrasse, Germany) · 2026Article
- Benchmarking physics-inspired machine learning models for transition metal complexes with diverse charge and spin states.Digital discovery · 2026Article
- Boosting Computational Catalysis and Chemical Reactivity with Artificial Intelligence.Journal of the American Chemical Society · 2026Review
- Foundation models for atomistic simulation of chemistry and materials.Nature reviews. Chemistry · 2026Review
- tmQMg* Data Set: Excited State Properties of 74k Transition Metal Complexes.Journal of chemical information and modeling · 2025Article
- Multi-level QTAIM-enriched graph neural networks for resolving properties of transition metal complexes.Digital discovery · 2025Article
- Graph neural networks for predicting metal-ligand coordination of transition metal complexes.Proceedings of the National Academy of Sciences of the United States of America · 2025Article
- A Deep Generative Model for the Inverse Design of Transition Metal Ligands and Complexes.JACS Au · 2025Article
- Article
- Data Checking of Asymmetric Catalysis Literature Using a Graph Neural Network Approach.Molecules (Basel, Switzerland) · 2025Article
- Automated prediction of ground state spin for transition metal complexes.Digital discovery · 2024Article
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6 authors.
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Abstract
Machine learning (ML) methods have shown promise for discovering novel catalysts but are often restricted to specific chemical domains. Generalizable ML models require large and diverse training data sets, which exist for heterogeneous catalysis but not for homogeneous catalysis. The tmQM data set, which contains properties of 86,665 transition metal complexes calculated at the TPSSh/def2-SVP level of density functional theory (DFT), provided a promising training data set for homogeneous catalyst systems. However, we find that ML models trained on tmQM consistently underpredict the energies of a chemically distinct subset of the data. To address this, we present the tmQM_wB97MV data set, which filters out several structures in tmQM found to be missing hydrogens and recomputes the energies of all other structures at the ωB97M-V/def2-SVPD level of DFT. ML models trained on tmQM_wB97MV show no pattern of consistently incorrect predictions and much lower errors than those trained on tmQM. The ML models tested on tmQM_wB97MV were, from best to worst, GemNet-T > PaiNN ≈ SpinConv > SchNet. Performance consistently improves when using only neutral structures instead of the entire data set. However, while models saturate with only neutral structures, more data continue to improve the models when including charged species, indicating the importance of accurately capturing a range of oxidation states in future data generation and model development. Furthermore, a fine-tuning approach in which weights were initialized from models trained on OC20 led to drastic improvements in model performance, indicating transferability between ML strategies of heterogeneous and homogeneous systems.
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