Evidence map›Paper›PMID 38048593›Full record

ArticleBlood2024

Transcriptional control of leukemogenesis by the chromatin reader SGF29.

Karina Barbosa, Anagha Deshpande, Marlenne Perales, Ping Xiang, Rabi Murad, Akula Bala Pramod, Anna Minkina, Neil Robertson, Fiorella Schischlik, Xue Lei and 11 more

Open access · greenAbstract read
In one paragraph

Article in Blood, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

21 authors at 8 institutions in 4 countries.

Karina BarbosaCancer Genome and Epigenetics Program, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA.ORCID 0000-0002-6233-3332
Anagha DeshpandeCancer Genome and Epigenetics Program, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA.
Marlenne PeralesCancer Genome and Epigenetics Program, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA.
Ping XiangBritish Columbia Cancer Agency, Vancouver, BC, Canada.
Rabi MuradCancer Genome and Epigenetics Program, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA.ORCID 0009-0004-5297-8307
Akula Bala PramodCancer Genome and Epigenetics Program, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA.
Anna MinkinaDepartment of Genome Sciences, University of Washington, Seattle, WA.
Neil RobertsonInstitute of Cancer Sciences, University of Glasgow, Glasgow, United Kingdom.ORCID 0000-0002-9509-1157
Fiorella SchischlikCancer Data Science Laboratory, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD.ORCID 0000-0003-4299-7657
Xue LeiCancer Genome and Epigenetics Program, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA.
Younguk SunCancer Genome and Epigenetics Program, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA.ORCID 0000-0002-1246-2558
Adam BrownResearch Unit Apoptosis in Hematopoietic Stem Cells, Helmholtz Center Munich, Munich, Germany.
Diana AmendResearch Unit Apoptosis in Hematopoietic Stem Cells, Helmholtz Center Munich, Munich, Germany.
Irmela JeremiasResearch Unit Apoptosis in Hematopoietic Stem Cells, Helmholtz Center Munich, Munich, Germany.ORCID 0000-0003-1773-7677
John G DoenchBroad Institute of Harvard and MIT, Cambridge, MA.
R Keith HumphriesBritish Columbia Cancer Agency, Vancouver, BC, Canada.
Eytan RuppinCancer Data Science Laboratory, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD.
Jay ShendureDepartment of Genome Sciences, University of Washington, Seattle, WA.
Prashant MaliDepartment of Bioengineering, University of California, San Diego, San Diego, CA.
Peter D AdamsCancer Genome and Epigenetics Program, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA.
Aniruddha J DeshpandeCancer Genome and Epigenetics Program, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA.ORCID 0000-0002-5240-9356
Sanford Burnham Prebys Medical Discovery Institute · USHelmholtz Zentrum München · DEBC Cancer Agency · CANational Institutes of Health · USUniversity of Washington · USBroad Institute · USUniversity of California San Diego · USUniversity of Glasgow · GB

Funding

Tumor Microenvironment and Cancer ImmunologyP30CA030199 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI ELENA B PASQUALE · 1985 to 2026
$107.2M
Computational studies of cancer immunotherapyZIABC011803 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI RUPPIN, EYTAN · 2018 to 2025
$10.7M
Molecular Pathogenesis of AF10-Rearranged LeukemiasR01CA262746 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI Aniruddha J. Deshpande · 2022 to 2026
$2.2M
NCI NIH HHS P30 CA030199NCI NIH HHS R01 CA262746
6 · The paper itself

Abstract

abstractAberrant expression of stem cell-associated genes is a common feature in acute myeloid leukemia (AML) and is linked to leukemic self-renewal and therapy resistance. Using AF10-rearranged leukemia as a prototypical example of the recurrently activated "stemness" network in AML, we screened for chromatin regulators that sustain its expression. We deployed a CRISPR-Cas9 screen with a bespoke domain-focused library and identified several novel chromatin-modifying complexes as regulators of the TALE domain transcription factor MEIS1, a key leukemia stem cell (LSC)-associated gene. CRISPR droplet sequencing revealed that many of these MEIS1 regulators coordinately controlled the transcription of several AML oncogenes. In particular, we identified a novel role for the Tudor-domain-containing chromatin reader protein SGF29 in the transcription of AML oncogenes. Furthermore, SGF29 deletion impaired leukemogenesis in models representative of multiple AML subtypes in multiple AML subtype models. Our studies reveal a novel role for SGF29 as a nononcogenic dependency in AML and identify the SGF29 Tudor domain as an attractive target for drug discovery.

Indexed as

Homeodomain ProteinsLeukemia, Myeloid, AcuteCarcinogenesisChromatinHumansMyeloid Ecotropic Viral Integration Site 1 ProteinTranscription FactorsChromatinHomeodomain ProteinsMyeloid Ecotropic Viral Integration Site 1 ProteinTranscription Factors

Identifiers

PMID38048593
PMCPMC10900139
OpenAlexW4389296199

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.