Evidence map›Paper›PMID 38048471›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2023

Multimodal interactions drive chromatin phase separation and compaction.

Tina Ukmar-Godec, Maria-Sol Cima-Omori, Zhadyra Yerkesh, Karthik Eswara, Taekyung Yu, Reshma Ramesh, Gwladys Riviere, Alain Ibanez de Opakua, Wolfgang Fischle, Markus Zweckstetter

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Conformational diversity of human HP1α.Protein science : a publication of the Protein Society · 2024
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Tina Ukmar-GodecGerman Center for Neurodegenerative Diseases, Translational Structural Biology, Göttingen 37075, Germany.ORCID 0000-0002-5763-2856
Maria-Sol Cima-OmoriGerman Center for Neurodegenerative Diseases, Translational Structural Biology, Göttingen 37075, Germany.ORCID 0000-0002-5624-2477
Zhadyra YerkeshBioscience Program, Biological and Environmental Science and Engineering Division, Laboratory of Chromatin Biochemistry, King Abdullah University of Science and Technology, Thuwal 23955, Saudi Arabia.
Karthik EswaraBioscience Program, Biological and Environmental Science and Engineering Division, Laboratory of Chromatin Biochemistry, King Abdullah University of Science and Technology, Thuwal 23955, Saudi Arabia.ORCID 0000-0001-7356-6361
Taekyung YuGerman Center for Neurodegenerative Diseases, Translational Structural Biology, Göttingen 37075, Germany.ORCID 0000-0002-6490-475X
Reshma RameshGerman Center for Neurodegenerative Diseases, Translational Structural Biology, Göttingen 37075, Germany.
Gwladys RiviereGerman Center for Neurodegenerative Diseases, Translational Structural Biology, Göttingen 37075, Germany.
Alain Ibanez de OpakuaGerman Center for Neurodegenerative Diseases, Translational Structural Biology, Göttingen 37075, Germany.
Wolfgang FischleBioscience Program, Biological and Environmental Science and Engineering Division, Laboratory of Chromatin Biochemistry, King Abdullah University of Science and Technology, Thuwal 23955, Saudi Arabia.ORCID 0000-0002-2335-8932
Markus ZweckstetterGerman Center for Neurodegenerative Diseases, Translational Structural Biology, Göttingen 37075, Germany.ORCID 0000-0002-2536-6581
German Center for Neurodegenerative Diseases · DEKing Abdullah University of Science and Technology · SA

Funding

EC | ERC | HORIZON EUROPE European Research Council (ERC) 787679
6 · The paper itself

Abstract

Gene silencing is intimately connected to DNA condensation and the formation of transcriptionally inactive heterochromatin by Heterochromatin Protein 1α (HP1α). Because heterochromatin foci are dynamic and HP1α can promote liquid-liquid phase separation, HP1α-mediated phase separation has been proposed as a mechanism of chromatin compaction. The molecular basis of HP1α-driven phase separation and chromatin compaction and the associated regulation by trimethylation of lysine 9 in histone 3 (H3K9me3), which is the hallmark of constitutive heterochromatin, is however largely unknown. Using a combination of chromatin compaction and phase separation assays, site-directed mutagenesis, and NMR-based interaction analysis, we show that human HP1α can compact chromatin in the absence of liquid-liquid phase separation. We further demonstrate that H3K9-trimethylation promotes compaction of chromatin arrays through multimodal interactions. The results provide molecular insights into HP1α-mediated chromatin compaction and thus into the role of human HP1α in the regulation of gene silencing.

Indexed as

ChromatinHeterochromatinChromosomal Proteins, Non-HistoneHistonesHumansTranscription FactorsChromatinChromosomal Proteins, Non-HistoneHeterochromatinHistonesTranscription Factorschromatin compactionH3K9-trimethylationHeterochromatin Protein 1α (HP1α)phase separation

Identifiers

PMID38048471
PMCPMC10723116
OpenAlexW4389296956

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.