Evidence map›Paper›PMID 38048463›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2023

Rex1BD and the 14-3-3 protein control heterochromatin organization at tandem repeats by linking RNAi and HDAC.

Jinxin Gao, Wenqi Sun, Jie Li, Hyoju Ban, Tuokai Zhang, Junwei Liao, Namho Kim, Soon Hoo Lee, Qianhua Dong, Robert Madramootoo and 2 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Jinxin Gao *Department of Biology, New York University, New York, NY 10003.ORCID 0000-0001-5429-7442
Wenqi Sun *Key Laboratory of Epigenetic Regulation and Intervention, State Key Laboratory of Molecular Biology, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai 200031, China.
Jie LiNational Facility for Protein Science Shanghai, Zhangjiang Lab, Shanghai Advanced Research Institute, Chinese Academy of Science, Shanghai 201210, China.ORCID 0009-0001-9440-9020
Hyoju BanDepartment of Biology, New York University, New York, NY 10003.
Tuokai ZhangDepartment of Biology, New York University, New York, NY 10003.ORCID 0009-0007-2227-364X
Junwei LiaoDepartment of Biology, New York University, New York, NY 10003.ORCID 0009-0008-5235-3541
Namho KimDepartment of Biology, New York University, New York, NY 10003.
Soon Hoo LeeDepartment of Biology, New York University, New York, NY 10003.
Qianhua DongDepartment of Biology, New York University, New York, NY 10003.ORCID 0000-0002-7667-8323
Robert MadramootooDepartment of Biology, New York University, New York, NY 10003.
Yong ChenKey Laboratory of Epigenetic Regulation and Intervention, State Key Laboratory of Molecular Biology, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai 200031, China.
Fei LiDepartment of Biology, New York University, New York, NY 10003.
New York University · USCenter for Excellence in Molecular Cell Science · CNShanghai Advanced Research Institute · CN

Funding

Molecular Basis of Centromere Specification and InheritanceR35GM134920 · NIGMS · NEW YORK UNIVERSITY · PI LI, FEI · 2020 to 2025
$4.2M
IMSD at Rutgers - New Brunswick (Renewal)T32GM139804 · NIGMS · RUTGERS BIOMEDICAL AND HEALTH SCIENCES · PI Brian Daniels, JAMES H. MILLONIG · 2021 to 2026
$2.9M
NIGMS NIH HHS R35 GM134920NIGMS NIH HHS T32 GM139804NIH HHS R35GM134920
6 · The paper itself

Abstract

Tandem DNA repeats are often organized into heterochromatin that is crucial for genome organization and stability. Recent studies revealed that individual repeats within tandem DNA repeats can behave very differently. How DNA repeats are assembled into distinct heterochromatin structures remains poorly understood. Here, we developed a genome-wide genetic screen using a reporter gene at different units in a repeat array. This screen led to identification of a conserved protein Rex1BD required for heterochromatin silencing. Our structural analysis revealed that Rex1BD forms a four-helix bundle structure with a distinct charged electrostatic surface. Mechanistically, Rex1BD facilitates the recruitment of Clr6 histone deacetylase (HDAC) by interacting with histones. Interestingly, Rex1BD also interacts with the 14-3-3 protein Rad25, which is responsible for recruiting the RITS (RNA-induced transcriptional silencing) complex to DNA repeats. Our results suggest that coordinated action of Rex1BD and Rad25 mediates formation of distinct heterochromatin structure at DNA repeats via linking RNAi and HDAC pathways.

Indexed as

SchizosaccharomycesSchizosaccharomyces pombe Proteins14-3-3 ProteinsDNAHeterochromatinHistone DeacetylasesRNA InterferenceTandem Repeat Sequences14-3-3 ProteinsDNAHeterochromatinHistone DeacetylasesSchizosaccharomyces pombe ProteinsHDACheterochromatinRex1BDRNAiSchizosaccharomyces pombe

Identifiers

PMID38048463
PMCPMC10723143
OpenAlexW4389297027

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.