Evidence map›Paper›PMID 38048422›Full record

ArticlePlant physiology2024

The extracellular vesicle proteomes of Sorghum bicolor and Arabidopsis thaliana are partially conserved.

Timothy Chaya, Aparajita Banerjee, Brian D Rutter, Deji Adekanye, Jean Ross, Guobin Hu, Roger W Innes, Jeffrey L Caplan

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Timothy ChayaDepartment of Plant and Soil Sciences, University of Delaware, Newark, DE 19716, USA.ORCID 0000-0003-4821-0317
Aparajita BanerjeeDepartment of Plant and Soil Sciences, University of Delaware, Newark, DE 19716, USA.ORCID 0000-0001-5711-4998
Brian D RutterDepartment of Biology, Indiana University, Bloomington, IN 47405, USA.ORCID 0000-0002-4354-9832
Deji AdekanyeDelaware Biotechnology Institute, University of Delaware, Newark, DE 19716, USA.ORCID 0009-0006-0123-2120
Jean RossDelaware Biotechnology Institute, University of Delaware, Newark, DE 19716, USA.ORCID 0000-0001-8837-1647
Guobin HuThe Laboratory for Biomolecular Structures, Brookhaven National Laboratory, Upton, NY 11973, USA.ORCID 0009-0002-8469-526X
Roger W InnesDepartment of Biology, Indiana University, Bloomington, IN 47405, USA.ORCID 0000-0001-9634-1413
Jeffrey L CaplanDepartment of Plant and Soil Sciences, University of Delaware, Newark, DE 19716, USA.ORCID 0000-0002-3991-0912
Biotechnology Institute · USIndiana University Bloomington · USBrookhaven National Laboratory · US

Funding

Predictive Modeling & Optimal Control Framework for Model-Based Epidemic Response in DelawareP20GM103446 · NIGMS · UNIVERSITY OF DELAWARE · PI MELINDA K DUNCAN · 2012 to 2026
$67.2M
Understanding synovial macrophage inflamm-aging within osteoarthritisP20GM139760 · NIGMS · UNIVERSITY OF DELAWARE · PI DAWN M ELLIOTT · 2021 to 2026
$19.1M
Serial Block Face Scanning Electron MicroscopeS10OD025165 · OD · UNIVERSITY OF DELAWARE · PI CAPLAN, JEFFREY L · 2018 to 2018
$600k
Spinning Disk Confocal and Single Molecule Localization MicroscopeS10OD030321 · OD · UNIVERSITY OF DELAWARE · PI CAPLAN, JEFFREY L · 2021 to 2021
$562k
NIGMS NIH HHS P20 GM103446NIGMS NIH HHS P20 GM139760NIH HHS S10 OD025165NIH HHS S10 OD030321
6 · The paper itself

Abstract

Plant extracellular vesicles (EVs) are membrane-bound organelles involved mainly in intercellular communications and defense responses against pathogens. Recent studies have demonstrated the presence of proteins, nucleic acids including small RNAs, and lipids along with other metabolites in plant EVs. Here, we describe the isolation and characterization of EVs from sorghum (Sorghum bicolor). Nanoparticle tracking analysis, dynamic light scattering, and cryo-electron tomography showed the presence of a heterogeneous population of EVs isolated from the apoplastic wash of sorghum leaves. Cryo-electron microscopy revealed that EVs had a median size of 110 nm and distinct populations of vesicles with single or multiple lipid bilayers and low or high amounts of contents. The heterogeneity was further supported by data showing that only a subset of EVs that were stained with a membrane dye, Potomac Gold, were also stained with the membrane-permeant esterase-dependent dye, calcein acetoxymethyl ester. Proteomic analysis identified 437 proteins that were enriched in multiple EV isolations, with the majority of these also found in the EV proteome of Arabidopsis (Arabidopsis thaliana). These data suggest a partial conservation of EV contents and function between the monocot, sorghum, and a distantly related eudicot, Arabidopsis.

Indexed as

ArabidopsisExtracellular VesiclesSorghumCryoelectron MicroscopyEdible GrainProteomeProteomicsProteome

Identifiers

PMID38048422
PMCPMC10904328
OpenAlexW4389297524

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.