Evidence map›Paper›PMID 38047771›Full record

ArticleeLife2023

Death by a thousand cuts through kinase inhibitor combinations that maximize selectivity and enable rational multitargeting.

Ian R Outhwaite, Sukrit Singh, Benedict-Tilman Berger, Stefan Knapp, John D Chodera, Markus A Seeliger

Open access · goldAbstract read
In one paragraph

Article in eLife, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.8field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Ian R OuthwaiteDepartment of Pharmacological Sciences, Stony Brook University, Stony Brook, United States.ORCID 0000-0003-2037-3261
Sukrit SinghDepartment of Pharmacological Sciences, Stony Brook University, Stony Brook, United States.ORCID 0000-0003-1914-4955
Benedict-Tilman BergerInstitute of Pharmaceutical Chemistry, Goethe University Frankfurt, Frankfurt am Main, Germany.
Stefan KnappInstitute of Pharmaceutical Chemistry, Goethe University Frankfurt, Frankfurt am Main, Germany.ORCID 0000-0001-5995-6494
John D ChoderaComputational and Systems Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, United States.ORCID 0000-0003-0542-119X
Markus A SeeligerDepartment of Pharmacological Sciences, Stony Brook University, Stony Brook, United States.ORCID 0000-0003-0990-1756
Goethe University Frankfurt · DEMemorial Sloan Kettering Cancer Center · USStony Brook University · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SELWYN M VICKERS · 1985 to 2026
$347.4M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM008444 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI FROHMAN, MICHAEL A. · 1992 to 2024
$12.6M
Dynamics of Ligand Binding and Protein Kinase Regulation_RenewalR35GM119437 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI Markus A Seeliger · 2016 to 2026
$6.5M
Chemical Biology Training InterfaceT32GM136572 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI ELIZABETH M BOON, Jessica Chuang Seeliger · 2020 to 2026
$2.9M
The role of reorganization energy in achieving selective kinase inhibition"R01GM121505 · NIGMS · SLOAN-KETTERING INST CAN RESEARCH · PI CHODERA, JOHN DAMON · 2017 to 2021
$1.8M
Damon Runyon Cancer Research Foundation DRQ-14-22NCI NIH HHS P30 CA008748NIGMS NIH HHS R01 GM121505NIGMS NIH HHS R35 GM119437NIGMS NIH HHS T32 GM008444NIGMS NIH HHS T32 GM136572NIH HHS R01GM121505NIH HHS R35GM119437NIH HHS T32GM008444NIH HHS T32GM136572Wellcome Trust
6 · The paper itself

Abstract

Kinase inhibitors are successful therapeutics in the treatment of cancers and autoimmune diseases and are useful tools in biomedical research. However, the high sequence and structural conservation of the catalytic kinase domain complicate the development of selective kinase inhibitors. Inhibition of off-target kinases makes it difficult to study the mechanism of inhibitors in biological systems. Current efforts focus on the development of inhibitors with improved selectivity. Here, we present an alternative solution to this problem by combining inhibitors with divergent off-target effects. We develop a multicompound-multitarget scoring (MMS) method that combines inhibitors to maximize target inhibition and to minimize off-target inhibition. Additionally, this framework enables optimization of inhibitor combinations for multiple on-targets. Using MMS with published kinase inhibitor datasets we determine potent inhibitor combinations for target kinases with better selectivity than the most selective single inhibitor and validate the predicted effect and selectivity of inhibitor combinations using in vitro and in cellulo techniques. MMS greatly enhances selectivity in rational multitargeting applications. The MMS framework is generalizable to other non-kinase biological targets where compound selectivity is a challenge and diverse compound libraries are available.

Indexed as

Antineoplastic AgentsNeoplasmsCatalytic DomainHumansPhosphotransferasesProtein Kinase InhibitorsAntineoplastic AgentsPhosphotransferasesProtein Kinase Inhibitorsbiochemistrychemical biologycomputational biologyinhibitor combinationsnonepolypharmacologyprotein kinasessystems biology

Identifiers

PMID38047771
PMCPMC10769483
OpenAlexW4389305972

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.