Evidence map›Paper›PMID 38047654›Full record

ArticleMicrobiology resource announcements2024

Direct metagenomic and amplicon-based Nanopore sequencing of French human monkeypox from clinical specimen.

Aurelia Kwasiborski, Véronique Hourdel, Charlotte Balière, Damien Hoinard, Quentin Grassin, Maxence Feher, Clémentine De La Porte Des Vaux, Mélanie Cresta, Jessica Vanhomwegen, Jean-Claude Manuguerra and 2 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Microbiology resource announcements, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Aurelia KwasiborskiInstitut Pasteur, Université Paris Cité, Environment and Infectious Risks Unit, Laboratory for Urgent Response to Biological Threats , Paris, France.
Véronique HourdelInstitut Pasteur, Université Paris Cité, Environment and Infectious Risks Unit, Laboratory for Urgent Response to Biological Threats , Paris, France.
Charlotte BalièreInstitut Pasteur, Université Paris Cité, Environment and Infectious Risks Unit, Laboratory for Urgent Response to Biological Threats , Paris, France.
Damien HoinardInstitut Pasteur, Université Paris Cité, Environment and Infectious Risks Unit, Laboratory for Urgent Response to Biological Threats , Paris, France.
Quentin GrassinInstitut Pasteur, Université Paris Cité, Environment and Infectious Risks Unit, Laboratory for Urgent Response to Biological Threats , Paris, France.
Maxence FeherInstitut Pasteur, Université Paris Cité, Environment and Infectious Risks Unit, Laboratory for Urgent Response to Biological Threats , Paris, France.
Clémentine De La Porte Des VauxBichat-Claude Bernard Hospital , Paris, France.
Mélanie CrestaBichat-Claude Bernard Hospital , Paris, France.
Jessica VanhomwegenInstitut Pasteur, Université Paris Cité, Environment and Infectious Risks Unit, Laboratory for Urgent Response to Biological Threats , Paris, France.
Jean-Claude ManuguerraInstitut Pasteur, Université Paris Cité, Environment and Infectious Risks Unit, Laboratory for Urgent Response to Biological Threats , Paris, France.
Christophe BatéjatInstitut Pasteur, Université Paris Cité, Environment and Infectious Risks Unit, Laboratory for Urgent Response to Biological Threats , Paris, France.
Valérie CaroInstitut Pasteur, Université Paris Cité, Environment and Infectious Risks Unit, Laboratory for Urgent Response to Biological Threats , Paris, France.ORCID 0000-0001-8477-5708

Funding

Association Instituts Carnot (Instituts Carnot) FIELD
6 · The paper itself

Abstract

We report the whole-genome sequence of monkeypox virus obtained using MinION technology (Oxford Nanopore Technologies) from a French clinical specimen during the 2022 epidemic. Amplicon-based sequencing and shotgun metagenomic approaches were directly applied to the sample.

Indexed as

amplicon-based sequencingmetagenomicsmonkeypox virusnanoporenext-generation sequencing

Identifiers

PMID38047654
PMCPMC10793249

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.