Evidence map›Paper›PMID 38046285›Full record

ArticleIsrael journal of chemistry2023

Spatial Chemoproteomics for Mapping the Active Proteome.

Colin S Swenson, Kavya Smitha Pillai, Anthony J Carlos, Raymond E Moellering

Open access · bronzeAbstract read
In one paragraph

Article in Israel journal of chemistry, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Colin S SwensonDepartment of Chemistry, University of Chicago, 5735 S Ellis Dr. Chicago, IL 60637, USA.
Kavya Smitha PillaiDepartment of Chemistry, University of Chicago, 5735 S Ellis Dr. Chicago, IL 60637, USA.
Anthony J CarlosDepartment of Chemistry, University of Chicago, 5735 S Ellis Dr. Chicago, IL 60637, USA.
Raymond E MoelleringDepartment of Chemistry, University of Chicago, 5735 S Ellis Dr. Chicago, IL 60637, USA.
University of Chicago · US

Funding

Multi-Disciplinary Training Grant in Cancer ResearchT32CA009594 · NCI · UNIVERSITY OF CHICAGO · PI KAY F MACLEOD, Scott A. Oakes · 1989 to 2026
$11.5M
Mapping Protein Social Network Dynamics with Photoproximity Profiling PlatformsR01GM145852 · NIGMS · UNIVERSITY OF CHICAGO · PI MOELLERING, RAYMOND E · 2022 to 2025
$1.5M
Single-Cell Protein Activity Profiling in Breast Cancer Cells and TissuesR33CA269094 · NCI · UNIVERSITY OF CHICAGO · PI MOELLERING, RAYMOND E · 2022 to 2024
$1.1M
Targeted Gene Regulation Using Engineered Synthetic Transcriptional RegulatorsF32GM148062 · NIGMS · UNIVERSITY OF CHICAGO · PI SWENSON, COLIN STUART · 2022 to 2023
$137k
NCI NIH HHS R33 CA269094NCI NIH HHS T32 CA009594NIGMS NIH HHS F32 GM148062NIGMS NIH HHS R01 GM145852
6 · The paper itself

Abstract

Functional regulation of cell signaling through dynamic changes in protein activity state as well as spatial organization represent two dynamic, complex, and conserved phenomena in biology. Seemingly separate areas of -omics method development have focused on building tools that can detect and quantify protein activity states, as well as map sub-cellular and intercellular protein organization. Integration of these efforts, through the development of chemical tools and platforms that enable detection and quantification of protein functional states with spatial resolution provide opportunities to better understand heterogeneity in the proteome within cell organelles, multi-cellular tissues, and whole organisms. This review provides an overview of and considerations for major classes of chemical proteomic probes and technologies that enable protein activity mapping from sub-cellular compartments to live animals.

Indexed as

Activity-Based ProteomicsChemical ProteomicsEnzymeImagingSpatial

Identifiers

PMID38046285
PMCPMC10688764
OpenAlexW4313596222

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.