ArticleBioinformatics advances2023
AdmixPipe v3: facilitating population structure delimitation from SNP data.
Article in Bioinformatics advances, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.
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Who cites it
3 citing papers in PubMed.
- Genomic Signatures in Maned Three-Toed Sloths From Ancient to Recent Environmental Changes in Brazil's Threatened Atlantic Forest.Molecular ecology · 2025Article
- Hybridization and Asymmetrical Introgression Between the Vulnerable Gray-Headed Chickadee and a More Abundant Congener, the Boreal Chickadee: Implications for Conservation.Ecology and evolution · 2025Article
- The genome sequence and genomic diversity of soybean tentiform leafminer (Macrosaccus morrisella).G3 (Bethesda, Md.) · 2025Article
Corrections and comments
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Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Summary: Quantifying genetic clusters (=populations) from genotypic data is a fundamental, but non-trivial task for population geneticists that is compounded by: hierarchical population structure, diverse analytical methods, and complex software dependencies. AdmixPipe v3 ameliorates many of these issues in a single bioinformatic pipeline that facilitates all facets of population structure analysis by integrating outputs generated by several popular packages (i.e. CLUMPAK, EvalAdmix). The pipeline interfaces disparate software packages to parse Admixture outputs and conduct EvalAdmix analyses in the context of multimodal population structure results identified by CLUMPAK. We further streamline these tasks by packaging AdmixPipe v3 within a Docker container to create a standardized analytical environment that allows for complex analyses to be replicated by different researchers. This also grants operating system flexibility and mitigates complex software dependencies. Availability and implementation: Source code, documentation, example files, and usage examples are freely available at https://github.com/stevemussmann/admixturePipeline. Installation is facilitated via Docker container available from https://hub.docker.com/r/mussmann/admixpipe. Usage under Windows operating systems requires the Windows Subsystem for Linux.
Identifiers
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Registered trials
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