Evidence map›Paper›PMID 38045627›Full record

ArticleHealth science reports2023

Exploring the relationship between SARS-CoV-2 variants, illness severity at presentation, in-hospital mortality and COVID-19 vaccination in a low middle-income country: A retrospective cross-sectional study.

Muhammad Zain Mushtaq, Nosheen Nasir, Syed Faisal Mahmood, Sara Khan, Akbar Kanji, Asghar Nasir, M Asif Syed, Uzma Bashir Aamir, Zahra Hasan

Abstract read
In one paragraph

Article in Health science reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Muhammad Zain MushtaqDepartment of Medicine The Aga Khan University Karachi Pakistan.ORCID 0000-0001-5988-577X
Nosheen NasirDepartment of Medicine The Aga Khan University Karachi Pakistan.ORCID 0000-0003-1610-8748
Syed Faisal MahmoodDepartment of Medicine The Aga Khan University Karachi Pakistan.
Sara KhanDepartment of Medicine The Aga Khan University Karachi Pakistan.
Akbar KanjiDepartment of Pathology and Laboratory Medicine The Aga Khan University Karachi Pakistan.ORCID 0000-0003-1862-3102
Asghar NasirDepartment of Pathology and Laboratory Medicine The Aga Khan University Karachi Pakistan.
M Asif SyedDepartment of Health Government of Sindh Hyderabad Pakistan.
Uzma Bashir AamirCountry Office World Health Organization Islamabad Pakistan.
Zahra HasanDepartment of Pathology and Laboratory Medicine The Aga Khan University Karachi Pakistan.ORCID 0000-0001-7580-372X

Funding

World Health Organization 001
6 · The paper itself

Abstract

Background and Aims: COVID-19 morbidity and mortality varied globally through the pandemic Methods: A retrospective review of clinical, laboratory, and vaccination data of 197 COVID-19 adult patients at the Aga Khan University Hospital, Karachi between April 2021, and February 2022 was performed. SARS-CoV-2 VOC identified in respiratory samples were analyzed. Univariate and multivariate analysis was conducted to identify factors associated with COVID-19 outcomes. Results: The median age of cases was 55 years and 51.8% were males. Twenty-four percent of females were pregnant. Of COVID-19 cases, 48.2% had nonsevere disease, while 52.8% had severe/critical disease. Hypertension (48%) and diabetes mellitus (41%) were common comorbids. SARS-CoV-2 VOC identified comprised; Omicron (55.3%), Beta (14.7%), Alpha (13.7%), Delta (12.7%), and Gamma (3.6%) variants. Most (59.7%) study subjects were unvaccinated. Of vaccines, 88% had received inactivated virus COVID-19 vaccines. Increased risk of severe disease was associated with age ≥50 years (odds ratio [OR]: 5.73; 95% confidence interval [CI]: [2.45-13.7]), as well as with diabetes mellitus (OR: 4.24; 95% CI: [1.82-9.85]). Full vaccination (OR: 0.25; 95% CI: [0.11-0.58]) or infection with Omicron (OR: 0.42; 95% CI: [0.23-0.74]) was associated with reduced disease severity. The risk of mortality increased with age ≥50 years (OR: 5.07; 95% CI: [1.92-13.42]) and a history of myocardial infarction (OR: 5.11; 95% CI: [1.45-17.93]) whilst, infection with Omicron was found to reduce the risk (OR: 0.22; 95% CI: [0.10-0.53]). Conclusion: Our study describes the relationship between the severity of COVID-19, in-hospital mortality in relation to SARS-CoV-2 variants, and the impact of COVID-19 vaccination in Pakistan. Outcomes were more favorable in younger individuals, after vaccinations and with Omicron variant infections. Most cases received inactivated virus vaccines therefore these data highlight the protection provided against severe COVID-19.

Indexed as

COVID‐19OmicronPakistanseverityvaccinations

Identifiers

PMID38045627
PMCPMC10690835

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.