Evidence map›Paper›PMID 38045273›Full record

ArticlebioRxiv : the preprint server for biology2024

Nephron progenitors rhythmically alternate between renewal and differentiation phases that synchronize with kidney branching morphogenesis.

Sachin N Davis, Samuel H Grindel, John M Viola, Grace Y Liu, Jiageng Liu, Grace Qian, Catherine M Porter, Alex J Hughes

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 4 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 1 country.

Sachin N DavisDepartment of Bioengineering, University of Pennsylvania, Philadelphia, 19104, PA, USA.
Samuel H GrindelDepartment of Bioengineering, University of Pennsylvania, Philadelphia, 19104, PA, USA.
John M ViolaDepartment of Bioengineering, University of Pennsylvania, Philadelphia, 19104, PA, USA.
Grace Y LiuDepartment of Bioengineering, University of Pennsylvania, Philadelphia, 19104, PA, USA.
Jiageng LiuDepartment of Bioengineering, University of Pennsylvania, Philadelphia, 19104, PA, USA.
Grace QianDepartment of Bioengineering, University of Pennsylvania, Philadelphia, 19104, PA, USA.
Catherine M PorterDepartment of Bioengineering, University of Pennsylvania, Philadelphia, 19104, PA, USA.
Alex J HughesDepartment of Bioengineering, University of Pennsylvania, Philadelphia, 19104, PA, USA.ORCID 0000-0001-6801-3455
University of Pennsylvania · USCalifornia Institute for Regenerative Medicine · USCancer Research Institute · USUniversity of Southern California · USChildren's Hospital of Philadelphia · USPenn Center for AIDS Research · US

Funding

TRANSGENIC AND CHIMERIC MOUSE COREP30DK050306 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI GARY D. WU · 1997 to 2026
$32.5M
Graduate Training in Developmental BiologyT32HD083185 · NICHD · UNIVERSITY OF PENNSYLVANIA · PI Michael Granato, Foteini Mourkioti · 2015 to 2026
$4.0M
A developmental engineering toolbox for large-scale tissue engineeringR35GM133380 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI Alex Hughes · 2019 to 2026
$3.3M
Rhythmic pace-making of nephron induction for renal replacement tissuesR01DK140070 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI Alex Hughes · 2024 to 2026
$2.1M
Engineering induction and assembly of human kidney tissueR01DK132296 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI HUGHES, ALEX · 2022 to 2025
$1.8M
NICHD NIH HHS T32 HD083185NIDDK NIH HHS P30 DK050306NIDDK NIH HHS R01 DK132296NIDDK NIH HHS R01 DK140070NIGMS NIH HHS R35 GM133380
6 · The paper itself

Abstract

The mammalian kidney achieves massive parallelization of function by exponentially duplicating nephron-forming niches during development. Each niche caps a tip of the ureteric bud epithelium (the future urinary collecting duct tree) as it undergoes branching morphogenesis, while nephron progenitors within niches balance self-renewal and differentiation to early nephron cells. Nephron formation rate approximately matches branching rate over a large fraction of mouse gestation, yet the nature of this apparent pace-maker is unknown. Here we correlate spatial transcriptomics data with branching 'life-cycle' to discover rhythmically alternating signatures of nephron progenitor differentiation and renewal across Wnt, Hippo-Yap, retinoic acid (RA), and other pathways. We then find in human stem-cell derived nephron progenitor organoids that Wnt/β-catenin-induced differentiation is converted to a renewal signal when it temporally overlaps with YAP activation. Similar experiments using RA activation indicate a role in setting nephron progenitor exit from the naive state, the spatial extent of differentiation, and nephron segment bias. Together the data suggest that nephron progenitor interpretation of consistent Wnt/β-catenin differentiation signaling in the niche may be modified by rhythmic activity in ancillary pathways to set the pace of nephron formation. This would synchronize nephron formation with ureteric bud branching, which creates new sites for nephron condensation. Our data bring temporal resolution to the renewal vs. differentiation balance in the nephrogenic niche and inform new strategies to achieve self-sustaining nephron formation in synthetic human kidney tissues.

Identifiers

PMID38045273
PMCPMC10690271
OpenAlexW4388911205

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.