Evidence map›Paper›PMID 38044680›Full record

ArticleMagnetic resonance in medicine2024

Replication of the bSTAR sequence and open-source implementation.

Nam G Lee, Grzegorz Bauman, Oliver Bieri, Krishna S Nayak

Open access · hybridAbstract read
In one paragraph

Article in Magnetic resonance in medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Nam G LeeAlfred E. Mann Department of Biomedical Engineering, University of Southern California, Los Angeles, California, USA.ORCID 0000-0001-5462-1492
Grzegorz BaumanDivision of Radiological Physics, Department of Radiology, University of Basel Hospital, Basel, Switzerland.
Oliver BieriDivision of Radiological Physics, Department of Radiology, University of Basel Hospital, Basel, Switzerland.ORCID 0000-0002-6755-5495
Krishna S NayakAlfred E. Mann Department of Biomedical Engineering, University of Southern California, Los Angeles, California, USA.ORCID 0000-0001-5735-3550
University of Basel · CHUniversity of Southern California · US

Funding

Novel Myocardial Perfusion Stress Test using Arterial Spin LabelingR01HL130494 · NHLBI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI NAYAK, KRISHNA S · 2016 to 2019
$1.7M
NHLBI NIH HHS R01 HL130494NHLBI NIH HHS R01-HL130494
6 · The paper itself

Abstract

purposeThe reproducibility of scientific reports is crucial to advancing human knowledge. This paper is a summary of our experience in replicating a balanced SSFP half-radial dual-echo imaging technique (bSTAR) using open-source frameworks as a response to the 2023 ISMRM "repeat it with me" Challenge.

methodsWe replicated the bSTAR technique for thoracic imaging at 0.55T. The bSTAR pulse sequence is implemented in Pulseq, a vendor neutral open-source rapid sequence prototyping environment. Image reconstruction is performed with the open-source Berkeley Advanced Reconstruction Toolbox (BART). The replication of bSTAR, termed open-source bSTAR, is tested by replicating several figures from the published literature. Original bSTAR, using the pulse sequence and image reconstruction developed by the original authors, and open-source bSTAR, with pulse sequence and image reconstruction developed in this work, were performed in healthy volunteers.

resultsBoth echo images obtained from open-source bSTAR contain no visible artifacts and show identical spatial resolution and image quality to those in the published literature. A direct head-to-head comparison between open-source bSTAR and original bSTAR on a healthy volunteer indicates that open-source bSTAR provides adequate SNR, spatial resolution, level of artifacts, and conspicuity of pulmonary vessels comparable to original bSTAR.

conclusionWe have successfully replicated bSTAR lung imaging at 0.55T using two open-source frameworks. Full replication of a research method solely relying on information on a research paper is unfortunately rare in research, but our success gives greater confidence that a research methodology can be indeed replicated as described.

Indexed as

ArtifactsMagnetic Resonance ImagingHumansReproducibility of Resultslung MRIopen-sourcereplicationreproducible research

Identifiers

PMID38044680
PMCPMC10872427
OpenAlexW4389311106

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.