Evidence map›Paper›PMID 38042866›Full record

ArticleScientific reports2023

Identification of intergenerational epigenetic inheritance by whole genome DNA methylation analysis in trios.

Anna Díez-Villanueva, Berta Martín, Ferran Moratalla-Navarro, Francisco D Morón-Duran, Iván Galván-Femenía, Mireia Obón-Santacana, Anna Carreras, Rafael de Cid, Miguel A Peinado, Victor Moreno

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

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  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Anna Díez-VillanuevaUnit of Biomarkers and Susceptibility (UBS), Oncology Data Analytics Program (ODAP), Catalan Institute of Oncology (ICO), L'Hospitalet del Llobregat, 08908, Barcelona, Spain.
Berta MartínGermans Trias i Pujol Institute (IGTP), Translational Program in Cancer Research (CARE), Camí de les Escoles, s/n, Can Ruti Biomedical Campus, 08916, Badalona, Catalonia, Spain.
Ferran Moratalla-NavarroUnit of Biomarkers and Susceptibility (UBS), Oncology Data Analytics Program (ODAP), Catalan Institute of Oncology (ICO), L'Hospitalet del Llobregat, 08908, Barcelona, Spain.
Francisco D Morón-DuranUnit of Biomarkers and Susceptibility (UBS), Oncology Data Analytics Program (ODAP), Catalan Institute of Oncology (ICO), L'Hospitalet del Llobregat, 08908, Barcelona, Spain.
Iván Galván-FemeníaGenomes for Life-GCAT lab., Germans Trias i Pujol Research Institute (IGTP), Camí de les Escoles, s/n, Can Ruti Biomedical Campus, 08916, Badalona, Catalonia, Spain.
Mireia Obón-SantacanaUnit of Biomarkers and Susceptibility (UBS), Oncology Data Analytics Program (ODAP), Catalan Institute of Oncology (ICO), L'Hospitalet del Llobregat, 08908, Barcelona, Spain.
Anna CarrerasGenomes for Life-GCAT lab., Germans Trias i Pujol Research Institute (IGTP), Camí de les Escoles, s/n, Can Ruti Biomedical Campus, 08916, Badalona, Catalonia, Spain.
Rafael de CidGenomes for Life-GCAT lab., Germans Trias i Pujol Research Institute (IGTP), Camí de les Escoles, s/n, Can Ruti Biomedical Campus, 08916, Badalona, Catalonia, Spain.
Miguel A PeinadoGermans Trias i Pujol Institute (IGTP), Translational Program in Cancer Research (CARE), Camí de les Escoles, s/n, Can Ruti Biomedical Campus, 08916, Badalona, Catalonia, Spain.
Victor MorenoUnit of Biomarkers and Susceptibility (UBS), Oncology Data Analytics Program (ODAP), Catalan Institute of Oncology (ICO), L'Hospitalet del Llobregat, 08908, Barcelona, Spain. v.moreno@iconcologia.net.ORCID 0000-0002-2818-5487
Institut d'Investigació en Ciències de la Salut Germans Trias i Pujol · ESInstitut d'Investigació Biomédica de Bellvitge · ESBellvitge University Hospital · ES

Funding

Fundación Científica Asociación Española Contra el Cáncer GCTRA18022MOREInstituto de Salud Carlos III PI20/01439Ministerio de Ciencia e Innovación PID2021-124315OB-I00Ministerio de Ciencia e Innovación RTC-2017-6685-1Ministerio de Ciencia e Innovación RTI2018-094009-B-I00Ministry of Health of the Generalitat of Catalunya ADE 10/00026PERIS SLT017/20/000042
6 · The paper itself

Abstract

Genome-wide association studies have identified thousands of loci associated with common diseases and traits. However, a large fraction of heritability remains unexplained. Epigenetic modifications, such as the observed in DNA methylation have been proposed as a mechanism of intergenerational inheritance. To investigate the potential contribution of DNA methylation to the missing heritability, we analysed the methylomes of four healthy trios (two parents and one offspring) using whole genome bisulphite sequencing. Of the 1.5 million CpGs (19%) with over 20% variability between parents in at least one family and compatible with a Mendelian inheritance pattern, only 3488 CpGs (0.2%) lacked correlation with any SNP in the genome, marking them as potential sites for intergenerational epigenetic inheritance. These markers were distributed genome-wide, with some preference to be located in promoters. They displayed a bimodal distribution, being either fully methylated or unmethylated, and were often found at the boundaries of genomic regions with high/low GC content. This analysis provides a starting point for future investigations into the missing heritability of simple and complex traits.

Indexed as

DNA MethylationGenome-Wide Association StudyCpG IslandsEpigenesis, GeneticGenomeMultifactorial Inheritance

Identifiers

PMID38042866
PMCPMC10693549
OpenAlexW4389273512

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.