Evidence map›Paper›PMID 38038798›Full record

ArticleFolia microbiologica2024

Diversity and composition of active and total bacteria in rhizospheric soil in response to continuous cropping years of Panax notoginseng.

Yuyan Liu, Limei Bao, Wanwan Sun, Yinshan Cui, Xiaoran Li, Xiuling Ji, Yunlin Wei, Yong Tan

Abstract read
PubMed Publisher
In one paragraph

Article in Folia microbiologica, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Yuyan LiuFaculty of Science, Kunming University of Science and Technology, No. 727 South Jingming Road, Chenggong District, Kunming, Yunnan Province, 650500, China.
Limei BaoFaculty of Science, Kunming University of Science and Technology, No. 727 South Jingming Road, Chenggong District, Kunming, Yunnan Province, 650500, China.
Wanwan SunFaculty of life Science and Technology, Kunming University of Science and Technology, No. 727 South Jingming Road, Chenggong District, Kunming, Yunnan Province, 650500, China.
Yinshan CuiFaculty of life Science and Technology, Kunming University of Science and Technology, No. 727 South Jingming Road, Chenggong District, Kunming, Yunnan Province, 650500, China.
Xiaoran LiFaculty of life Science and Technology, Kunming University of Science and Technology, No. 727 South Jingming Road, Chenggong District, Kunming, Yunnan Province, 650500, China.
Xiuling JiFaculty of life Science and Technology, Kunming University of Science and Technology, No. 727 South Jingming Road, Chenggong District, Kunming, Yunnan Province, 650500, China.
Yunlin WeiFaculty of life Science and Technology, Kunming University of Science and Technology, No. 727 South Jingming Road, Chenggong District, Kunming, Yunnan Province, 650500, China. weiyunlin18@163.com.
Yong TanFaculty of Science, Kunming University of Science and Technology, No. 727 South Jingming Road, Chenggong District, Kunming, Yunnan Province, 650500, China. tanyong551@163.com.ORCID http://orcid.org/0000-0002-6677-7192
Kunming University of Science and Technology · CN

Funding

National Natural Science Foundation of China 31960232National Natural Science Foundation of China No. 31960630
6 · The paper itself

Abstract

The synchronous research and analysis of total and active soil microbial communities can provide insight into how these communities are impacted by continuous cropping years and pathogen infection. The diversity of total and active bacteria in rhizospheric soil of 2-year-old and 3-year-old healthy and diseased Panax notoginseng can comprehensively reveal the bacterial response characteristics in continuous cropping practice. The results showed that 4916 operational taxonomic units (OTUs) were found in the rhizospheric soil bacterial community of P. notoginseng at the DNA level, but only 2773 OTUs were found at the RNA level. The rhizospheric environment had significant effects on the active and bacterial communities, as indicated by the number of OTUs, Shannon, Chao1, Faith's phylogenetic diversity (Faith's PD), and Simpson's diversity indexes. The DNA level can better show the difference in diversity level before and after infection with root rot. The bacterial Chao1 and Faith's PD diversity indexes of 2-year-old root rot-diseased P. notoginseng rhizospheric soil (D2) were higher than that of healthy plants, while the bacterial Shannon diversity index of 3-year-old root rot-diseased P. notoginseng rhizospheric soil (D3) was the lowest in the total bacteria. Principal coordinate analysis (PCoA) illustrated that the total bacterial species composition changed markedly after root rot disease. There were significant differences in the composition of active bacterial species between the 2-year and 3-year rhizospheres. In conclusion, the total and active edaphic rhizospheric bacterial communities could provide important opportunities to understand the responses of bacteria to continuous cropping of P. notoginseng.

Indexed as

BacteriaBiodiversityPanax notoginsengPhylogenyRhizosphereSoil MicrobiologyDNA, BacterialPlant DiseasesPlant RootsRNA, Ribosomal, 16SSoilDNA, BacterialRNA, Ribosomal, 16SSoilContinuous cropping obstacleHigh-throughput sequencingPanax notoginsengTotal DNATotal RNA

Identifiers

PMID38038798
OpenAlexW4389240445

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.