Evidence map›Paper›PMID 38037543›Full record

ArticleEnvironmental microbiology reports2024

Denitrification in low oxic environments increases the accumulation of nitrogen oxide intermediates and modulates the evolutionary potential of microbial populations.

Kohei Takahashi, Mamoru Oshiki, Chujin Ruan, Kana Morinaga, Masanori Toyofuku, Nobuhiko Nomura, David R Johnson

Open access · hybridAbstract read
In one paragraph

Article in Environmental microbiology reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Kohei TakahashiGraduate School of Sciences and Technologies, University of Tsukuba, Tsukuba, Ibaraki, Japan.
Mamoru OshikiDivision of Environmental Engineering, Faculty of Engineering, Hokkaido University, Sapporo, Hokkaido, Japan.
Chujin RuanDepartment of Environmental Microbiology, Swiss Federal Institute of Aquatic Science and Technology (Eawag), Dübendorf, Switzerland.
Kana MorinagaGraduate School of Sciences and Technologies, University of Tsukuba, Tsukuba, Ibaraki, Japan.
Masanori ToyofukuFaculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan.
Nobuhiko NomuraFaculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan.
David R JohnsonDepartment of Environmental Microbiology, Swiss Federal Institute of Aquatic Science and Technology (Eawag), Dübendorf, Switzerland.ORCID 0000-0002-6728-8462
University of Tsukuba · JPHokkaido University of Science · JPSwiss Federal Institute of Aquatic Science and Technology · CHUniversity of Bern · CH

Funding

Exploratory Research for Advanced Technology JPMJER1502Fusion Oriented REsearch for disruptive Science and Technology JPMJFR216ZJapan Society for the Promotion of Science 20H02290Japan Society for the Promotion of Science 21J20382Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung 310030_207471Young Researchers' Exchange Programme between Japan and Switzerland 2021 JP-EG_02_042021
6 · The paper itself

Abstract

Denitrification in oxic environments occurs when a microorganism uses nitrogen oxides as terminal electron acceptors even though oxygen is available. While this phenomenon is well-established, its consequences on ecological and evolutionary processes remain poorly understood. We hypothesize here that denitrification in oxic environments can modify the accumulation profiles of nitrogen oxide intermediates with cascading effects on the evolutionary potentials of denitrifying microorganisms. To test this, we performed laboratory experiments with Paracoccus denitrificans and complemented them with individual-based computational modelling. We found that denitrification in low oxic environments significantly increases the accumulation of nitrite and nitric oxide. We further found that the increased accumulation of these intermediates has a negative effect on growth at low pH. Finally, we found that the increased negative effect at low pH increases the number of individuals that contribute to surface-associated growth. This increases the amount of genetic diversity that is preserved from the initial population, thus increasing the number of genetic targets for natural selection to act upon and resulting in higher evolutionary potentials. Together, our data highlight that denitrification in low oxic environments can affect the ecological processes and evolutionary potentials of denitrifying microorganisms by modifying the accumulation of nitrogen oxide intermediates.

Indexed as

DenitrificationNitric OxideHumansNitritesNitrogenNitrous OxideNitric OxideNitritesNitrogenNitrous Oxide

Identifiers

PMID38037543
PMCPMC10866065
OpenAlexW4389227455

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.