Evidence map›Paper›PMID 38036567›Full record

ArticleNature communications2023

SARS-CoV-2 nsp3 and nsp4 are minimal constituents of a pore spanning replication organelle.

Liv Zimmermann, Xiaohan Zhao, Jana Makroczyova, Moritz Wachsmuth-Melm, Vibhu Prasad, Zach Hensel, Ralf Bartenschlager, Petr Chlanda

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
13.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 90 citations in OpenAlex.

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15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Liv ZimmermannSchaller Research Group, Department of Infectious Diseases, Virology, Heidelberg University, 69120, Heidelberg, Germany.ORCID 0000-0003-0651-8460
Xiaohan ZhaoSchaller Research Group, Department of Infectious Diseases, Virology, Heidelberg University, 69120, Heidelberg, Germany.
Jana MakroczyovaSchaller Research Group, Department of Infectious Diseases, Virology, Heidelberg University, 69120, Heidelberg, Germany.ORCID 0000-0001-6769-5597
Moritz Wachsmuth-MelmSchaller Research Group, Department of Infectious Diseases, Virology, Heidelberg University, 69120, Heidelberg, Germany.ORCID 0000-0002-9033-1705
Vibhu PrasadDepartment of Infectious Diseases, Molecular Virology, Heidelberg University, 69120, Heidelberg, Germany.ORCID 0000-0001-7450-607X
Zach HenselITQB NOVA, Universidade NOVA de Lisboa, 2780-157, Oeiras, Portugal.ORCID 0000-0002-4348-6229
Ralf BartenschlagerDepartment of Infectious Diseases, Molecular Virology, Heidelberg University, 69120, Heidelberg, Germany.ORCID 0000-0001-5601-9307
Petr ChlandaSchaller Research Group, Department of Infectious Diseases, Virology, Heidelberg University, 69120, Heidelberg, Germany. petr.chlanda@bioquant.uni-heidelberg.de.ORCID 0000-0002-7782-2139
Heidelberg University · DEGerman Cancer Research Center · DEUniversidade Nova de Lisboa · PT

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) 240245660-SFB1129
6 · The paper itself

Abstract

Coronavirus replication is associated with the remodeling of cellular membranes, resulting in the formation of double-membrane vesicles (DMVs). A DMV-spanning pore was identified as a putative portal for viral RNA. However, the exact components and the structure of the SARS-CoV-2 DMV pore remain to be determined. Here, we investigate the structure of the DMV pore by in situ cryo-electron tomography combined with subtomogram averaging. We identify non-structural protein (nsp) 3 and 4 as minimal components required for the formation of a DMV-spanning pore, which is dependent on nsp3-4 proteolytic cleavage. In addition, we show that Mac2-Mac3-DPUP-Ubl2 domains are critical for nsp3 oligomerization and crown integrity which influences membrane curvature required for biogenesis of DMVs. Altogether, SARS-CoV-2 nsp3-4 have a dual role by driving the biogenesis of replication organelles and assembly of DMV-spanning pores which we propose here to term replicopores.

Indexed as

COVID-19SARS-CoV-2HumansOrganellesViral Nonstructural ProteinsVirus ReplicationViral Nonstructural Proteins

Identifiers

PMID38036567
PMCPMC10689437
OpenAlexW4389168350

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.