Evidence map›Paper›PMID 38036525›Full record

ArticleNature communications2023

Engineered immunogens to elicit antibodies against conserved coronavirus epitopes.

A Brenda Kapingidza, Daniel J Marston, Caitlin Harris, Daniel Wrapp, Kaitlyn Winters, Dieter Mielke, Lu Xiaozhi, Qi Yin, Andrew Foulger, Rob Parks and 29 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

39 authors at 3 institutions in 1 country.

A Brenda Kapingidza *Duke Human Vaccine Institute, Duke University, Durham, NC, USA.
Daniel J Marston *Duke Human Vaccine Institute, Duke University, Durham, NC, USA.
Caitlin HarrisDuke Human Vaccine Institute, Duke University, Durham, NC, USA.ORCID 0000-0002-8793-1662
Daniel WrappDuke Human Vaccine Institute, Duke University, Durham, NC, USA.
Kaitlyn WintersDuke Human Vaccine Institute, Duke University, Durham, NC, USA.
Dieter MielkeDepartment of Surgery, Duke University, Durham, NC, USA.ORCID 0000-0003-2182-0510
Lu XiaozhiDuke Human Vaccine Institute, Duke University, Durham, NC, USA.
Qi YinDuke Human Vaccine Institute, Duke University, Durham, NC, USA.
Andrew FoulgerDuke Human Vaccine Institute, Duke University, Durham, NC, USA.
Rob ParksDuke Human Vaccine Institute, Duke University, Durham, NC, USA.
Maggie BarrDuke Human Vaccine Institute, Duke University, Durham, NC, USA.
Amanda NewmanDuke Human Vaccine Institute, Duke University, Durham, NC, USA.
Alexandra SchäferDepartment of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.ORCID 0000-0002-4760-4923
Amanda EatonDepartment of Surgery, Duke University, Durham, NC, USA.ORCID 0000-0003-3064-2947
Justine Mae FloresDuke Human Vaccine Institute, Duke University, Durham, NC, USA.
Austin HarnerDuke Human Vaccine Institute, Duke University, Durham, NC, USA.
Nicholas J CatanzaroDepartment of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Michael L MalloryDepartment of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Melissa D MattocksDepartment of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Christopher BeverlyDuke Human Vaccine Institute, Duke University, Durham, NC, USA.
Brianna RhodesDuke Human Vaccine Institute, Duke University, Durham, NC, USA.
Katayoun MansouriDuke Human Vaccine Institute, Duke University, Durham, NC, USA.
Elizabeth Van ItallieDuke Human Vaccine Institute, Duke University, Durham, NC, USA.
Pranay VureDuke Human Vaccine Institute, Duke University, Durham, NC, USA.
Brooke DunnDepartment of Surgery, Duke University, Durham, NC, USA.
Taylor KeyesDepartment of Surgery, Duke University, Durham, NC, USA.
Sherry Stanfield-OakleyDepartment of Surgery, Duke University, Durham, NC, USA.
Christopher W WoodsDuke Human Vaccine Institute, Duke University, Durham, NC, USA.ORCID 0000-0001-7240-2453
Elizabeth A PetzoldCenter for Infectious Diseases and Diagnostic Innovation, Duke University Medical Center, Durham, NC, USA.
Emmanuel B WalterDuke Human Vaccine Institute, Duke University, Durham, NC, USA.
Kevin WieheDuke Human Vaccine Institute, Duke University, Durham, NC, USA.
Robert J EdwardsDuke Human Vaccine Institute, Duke University, Durham, NC, USA.ORCID 0000-0003-4446-1194
David C MontefioriDepartment of Surgery, Duke University, Durham, NC, USA.ORCID 0000-0003-0856-6319
Guido FerrariDuke Human Vaccine Institute, Duke University, Durham, NC, USA.
Ralph BaricDepartment of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.ORCID 0000-0001-6827-8701
Derek W CainDuke Human Vaccine Institute, Duke University, Durham, NC, USA.
Kevin O SaundersDuke Human Vaccine Institute, Duke University, Durham, NC, USA.ORCID 0000-0001-7399-7954
Barton F HaynesDuke Human Vaccine Institute, Duke University, Durham, NC, USA.ORCID 0000-0002-7643-9023
Mihai L AzoiteiDuke Human Vaccine Institute, Duke University, Durham, NC, USA. mihai.azoitei@duke.edu.ORCID 0009-0005-7198-1162
Duke University · USUniversity of North Carolina at Chapel Hill · USDuke Medical Center · US

Funding

Project 4: Computational panbetaCoV immunogen designP01AI158571 · NIAID · DUKE UNIVERSITY · PI HAYNES, BARTON F. · 2021 to 2023
$28.0M
Novel Immunogens to Elicit Broadly Cross-reactive Antibodies That Target the Hemagglutinin Head Trimer InterfaceR01AI155804 · NIAID · DUKE UNIVERSITY · PI AZOITEI, MIHAI LUCHIAN · 2021 to 2024
$3.9M
NIAID NIH HHS P01 AI158571NIAID NIH HHS R01 AI155804
6 · The paper itself

Abstract

Immune responses to SARS-CoV-2 primarily target the receptor binding domain of the spike protein, which continually mutates to escape acquired immunity. Other regions in the spike S2 subunit, such as the stem helix and the segment encompassing residues 815-823 adjacent to the fusion peptide, are highly conserved across sarbecoviruses and are recognized by broadly reactive antibodies, providing hope that vaccines targeting these epitopes could offer protection against both current and emergent viruses. Here we employ computational modeling to design scaffolded immunogens that display the spike 815-823 peptide and the stem helix epitopes without the distracting and immunodominant receptor binding domain. These engineered proteins bind with high affinity and specificity to the mature and germline versions of previously identified broadly protective human antibodies. Epitope scaffolds interact with both sera and isolated monoclonal antibodies with broadly reactivity from individuals with pre-existing SARS-CoV-2 immunity. When used as immunogens, epitope scaffolds elicit sera with broad betacoronavirus reactivity and protect as "boosts" against live virus challenge in mice, illustrating their potential as components of a future pancoronavirus vaccine.

Indexed as

Antibodies, ViralSARS-CoV-2AnimalsAntibodies, NeutralizingEpitopesHumansImmunodominant EpitopesMicePeptidesSpike Glycoprotein, CoronavirusAntibodies, NeutralizingAntibodies, ViralEpitopesImmunodominant EpitopesPeptidesSpike Glycoprotein, Coronavirus

Identifiers

PMID38036525
PMCPMC10689493
OpenAlexW4389183324

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.