Evidence map›Paper›PMID 38035197›Full record

ArticlePatterns (New York, N.Y.)2023

EXSCLAIM!: Harnessing materials science literature for self-labeled microscopy datasets.

Eric Schwenker, Weixin Jiang, Trevor Spreadbury, Nicola Ferrier, Oliver Cossairt, Maria K Y Chan

Abstract read
In one paragraph

Article in Patterns (New York, N.Y.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Eric SchwenkerCenter for Nanoscale Materials, Argonne National Laboratory, Argonne, IL 60439, USA.
Weixin JiangCenter for Nanoscale Materials, Argonne National Laboratory, Argonne, IL 60439, USA.
Trevor SpreadburyCenter for Nanoscale Materials, Argonne National Laboratory, Argonne, IL 60439, USA.
Nicola FerrierMathematics and Computer Science, Argonne National Laboratory, Argonne, IL 60439, USA.
Oliver CossairtDepartment of Computer Science, Northwestern University, Evanston, IL 60208, USA.
Maria K Y ChanCenter for Nanoscale Materials, Argonne National Laboratory, Argonne, IL 60439, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This work introduces the EXSCLAIM! toolkit for the automatic extraction, separation, and caption-based natural language annotation of images from scientific literature. EXSCLAIM! is used to show how rule-based natural language processing and image recognition can be leveraged to construct an electron microscopy dataset containing thousands of keyword-annotated nanostructure images. Moreover, it is demonstrated how a combination of statistical topic modeling and semantic word similarity comparisons can be used to increase the number and variety of keyword annotations on top of the standard annotations from EXSCLAIM! With large-scale imaging datasets constructed from scientific literature, users are well positioned to train neural networks for classification and recognition tasks specific to microscopy-tasks often otherwise inhibited by a lack of sufficient annotated training data.

Identifiers

PMID38035197
PMCPMC10682750

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.