Evidence map›Paper›PMID 38033166›Full record

ArticlePLoS computational biology2023

Modeling the diverse effects of divisive normalization on noise correlations.

Oren Weiss, Hayley A Bounds, Hillel Adesnik, Ruben Coen-Cagli

Abstract read
In one paragraph

Article in PLoS computational biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

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3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Oren WeissDepartment of Systems and Computational Biology, Albert Einstein College of Medicine, Bronx, New York, United States of America.ORCID 0000-0001-8609-544X
Hayley A BoundsHelen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, California, United States of America.
Hillel AdesnikHelen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, California, United States of America.
Ruben Coen-CagliDepartment of Systems and Computational Biology, Albert Einstein College of Medicine, Bronx, New York, United States of America.ORCID 0000-0003-2052-5894

Funding

Validating Theoretical Models with Neurophysiology and OptogeneticsU19NS107613 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI JI, NA · 2018 to 2022
$16.7M
Excitation and Inhibition in Neural Circuits of the Visual CortexR01EY023756 · NEI · UNIVERSITY OF CALIFORNIA BERKELEY · PI Hillel Adesnik · 2013 to 2026
$6.1M
High speed, high precision volumetric multiphoton neural controlUF1NS107574 · NINDS · UNIVERSITY OF CALIFORNIA BERKELEY · PI ADESNIK, HILLEL · 2018 to 2018
$5.1M
Natural image processing in the visual cortexR01EY030578 · NEI · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI Ruben Coen-Cagli, ADAM KOHN · 2019 to 2026
$2.9M
High-throughput Physiological Micro-connectivity Mapping in VivoRF1MH120680 · NIMH · UNIVERSITY OF CALIFORNIA BERKELEY · PI ADESNIK, HILLEL · 2019 to 2021
$2.2M
Computational Tools for assessing mechanisms and functional relevance of divisive normalizationRF1DA056400 · NIDA · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI COEN-CAGLI, RUBEN · 2022 to 2022
$1.2M
NEI NIH HHS R01 EY023756NEI NIH HHS R01 EY030578NIDA NIH HHS RF1 DA056400NIMH NIH HHS RF1 MH120680NINDS NIH HHS U19 NS107613NINDS NIH HHS UF1 NS107574
6 · The paper itself

Abstract

Divisive normalization, a prominent descriptive model of neural activity, is employed by theories of neural coding across many different brain areas. Yet, the relationship between normalization and the statistics of neural responses beyond single neurons remains largely unexplored. Here we focus on noise correlations, a widely studied pairwise statistic, because its stimulus and state dependence plays a central role in neural coding. Existing models of covariability typically ignore normalization despite empirical evidence suggesting it affects correlation structure in neural populations. We therefore propose a pairwise stochastic divisive normalization model that accounts for the effects of normalization and other factors on covariability. We first show that normalization modulates noise correlations in qualitatively different ways depending on whether normalization is shared between neurons, and we discuss how to infer when normalization signals are shared. We then apply our model to calcium imaging data from mouse primary visual cortex (V1), and find that it accurately fits the data, often outperforming a popular alternative model of correlations. Our analysis indicates that normalization signals are often shared between V1 neurons in this dataset. Our model will enable quantifying the relation between normalization and covariability in a broad range of neural systems, which could provide new constraints on circuit mechanisms of normalization and their role in information transmission and representation.

Indexed as

Visual CortexAnimalsBrainMiceModels, NeurologicalNeuronsNoisePhotic Stimulation

Identifiers

PMID38033166
PMCPMC10715670

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.