Evidence map›Paper›PMID 38032904›Full record

ArticlePLoS computational biology2023

Metamodelling of a two-population spiking neural network.

Jan-Eirik W Skaar, Nicolai Haug, Alexander J Stasik, Gaute T Einevoll, Kristin Tøndel

Abstract read
In one paragraph

Article in PLoS computational biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jan-Eirik W SkaarFaculty of Science and Technology, Norwegian University of Life Sciences, Ås, Norway.ORCID 0000-0002-3610-5926
Nicolai HaugFaculty of Science and Technology, Norwegian University of Life Sciences, Ås, Norway.ORCID 0000-0002-9945-7208
Alexander J StasikFaculty of Science and Technology, Norwegian University of Life Sciences, Ås, Norway.ORCID 0000-0003-1646-2472
Gaute T EinevollFaculty of Science and Technology, Norwegian University of Life Sciences, Ås, Norway.
Kristin TøndelFaculty of Science and Technology, Norwegian University of Life Sciences, Ås, Norway.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In computational neuroscience, hypotheses are often formulated as bottom-up mechanistic models of the systems in question, consisting of differential equations that can be numerically integrated forward in time. Candidate models can then be validated by comparison against experimental data. The model outputs of neural network models depend on both neuron parameters, connectivity parameters and other model inputs. Successful model fitting requires sufficient exploration of the model parameter space, which can be computationally demanding. Additionally, identifying degeneracy in the parameters, i.e. different combinations of parameter values that produce similar outputs, is of interest, as they define the subset of parameter values consistent with the data. In this computational study, we apply metamodels to a two-population recurrent spiking network of point-neurons, the so-called Brunel network. Metamodels are data-driven approximations to more complex models with more desirable computational properties, which can be run considerably faster than the original model. Specifically, we apply and compare two different metamodelling techniques, masked autoregressive flows (MAF) and deep Gaussian process regression (DGPR), to estimate the power spectra of two different signals; the population spiking activities and the local field potential. We find that the metamodels are able to accurately model the power spectra in the asynchronous irregular regime, and that the DGPR metamodel provides a more accurate representation of the simulator compared to the MAF metamodel. Using the metamodels, we estimate the posterior probability distributions over parameters given observed simulator outputs separately for both LFP and population spiking activities. We find that these distributions correctly identify parameter combinations that give similar model outputs, and that some parameters are significantly more constrained by observing the LFP than by observing the population spiking activities.

Indexed as

Neural Networks, ComputerNeurons

Identifiers

PMID38032904
PMCPMC10688753

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.