Evidence map›Paper›PMID 38031883›Full record

ArticleGlia2024

Proteomic profiling of interferon-responsive reactive astrocytes in rodent and human.

Priya Prakash, Hediye Erdjument-Bromage, Michael R O'Dea, Christy N Munson, David Labib, Valentina Fossati, Thomas A Neubert, Shane A Liddelow

Open access · hybridAbstract read
In one paragraph

Article in Glia, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
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  14. Article
  15. Heterogeneity of Astrocyte Reactivity.Annual review of neuroscience · 2025
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Central TYK2 inhibition identifies TYK2 as a key neuroimmune modulator.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Priya PrakashNeuroscience Institute, NYU Grossman School of Medicine, New York, New York, USA.ORCID 0000-0003-2193-9669
Hediye Erdjument-BromageNeuroscience Institute, NYU Grossman School of Medicine, New York, New York, USA.ORCID 0000-0003-0224-3594
Michael R O'DeaNeuroscience Institute, NYU Grossman School of Medicine, New York, New York, USA.ORCID 0000-0002-6135-7607
Christy N MunsonNeuroscience Institute, NYU Grossman School of Medicine, New York, New York, USA.ORCID 0009-0001-7858-8161
David LabibThe New York Stem Cell Foundation Research Institute, New York, New York, USA.ORCID 0000-0002-9344-9856
Valentina FossatiThe New York Stem Cell Foundation Research Institute, New York, New York, USA.ORCID 0000-0003-1825-9371
Thomas A NeubertNeuroscience Institute, NYU Grossman School of Medicine, New York, New York, USA.ORCID 0000-0001-7049-2088
Shane A LiddelowNeuroscience Institute, NYU Grossman School of Medicine, New York, New York, USA.ORCID 0000-0002-0840-1437
New York University · USNew York Stem Cell Foundation · US

Funding

Medical Scientist Training Program Training GrantT32GM145449 · NIGMS · DUKE UNIVERSITY · PI Christopher D Kontos · 2022 to 2026
$6.6M
Impact of sex differences on the trajectory of interactome dysfunctions across the AD spectrumR01AG074004 · NIA · SLOAN-KETTERING INST CAN RESEARCH · PI CHIOSIS, GABRIELA, GINSBERG, STEPHEN D · 2021 to 2025
$6.0M
Selective interactome vulnerability across the Alzheimer’s disease spectrumR01AG072599 · NIA · SLOAN-KETTERING INST CAN RESEARCH · PI GABRIELA CHIOSIS, STEPHEN D GINSBERG · 2023 to 2026
$5.4M
Neuropathology and inflammation in a nonhuman primate model of insulin resistance/metabolic syndromeR01AG085572 · NIA · UNIVERSITY OF CALIFORNIA AT DAVIS · PI STEPHEN D GINSBERG, PETER J HAVEL · 2024 to 2026
$3.8M
Neurotoxicity of Reactive Astrocyte-secreted Lipids in Neurodegenerative DiseaseR01EY033353 · NEI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Shane Liddelow · 2022 to 2026
$2.5M
Selective interactome vulnerability across the Alzheimer’s disease spectrumR56AG072599 · NIA · SLOAN-KETTERING INST CAN RESEARCH · PI CHIOSIS, GABRIELA, GINSBERG, STEPHEN D · 2021 to 2021
$1.2M
LTQ-Orbitrap Mass Spectrometer.S10RR027990 · NCRR · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI NEUBERT, THOMAS A · 2011 to 2011
$600k
Alzheimer's AssociationNCRR NIH HHS S10 RR027990NEI NIH HHS R01 EY033353NIA NIH HHS R01 AG072599NIA NIH HHS R01 AG074004NIA NIH HHS R01 AG085572NIA NIH HHS R56 AG072599NIGMS NIH HHS T32 GM145449NIH HHS S10RR027990
6 · The paper itself

Abstract

Astrocytes are a heterogeneous population of central nervous system glial cells that respond to pathological insults and injury by undergoing a transformation called "reactivity." Reactive astrocytes exhibit distinct and context-dependent cellular, molecular, and functional state changes that can either support or disturb tissue homeostasis. We recently identified a reactive astrocyte sub-state defined by interferon-responsive genes like Igtp, Ifit3, Mx1, and others, called interferon-responsive reactive astrocytes (IRRAs). To further this transcriptomic definition of IRRAs, we wanted to define the proteomic changes that occur in this reactive sub-state. We induced IRRAs in immunopanned rodent astrocytes and human iPSC-differentiated astrocytes using TNF, IL1α, C1Q, and IFNβ and characterized their proteomic profile (both cellular and secreted) using unbiased quantitative proteomics. We identified 2335 unique cellular proteins, including IFIT2/3, IFITM3, OASL1/2, MX1/2/3, and STAT1. We also report that rodent and human IRRAs secrete PAI1, a serine protease inhibitor which may influence reactive states and functions of nearby cells. Finally, we evaluated how IRRAs are distinct from neurotoxic reactive astrocytes (NRAs). While NRAs are described by expression of the complement protein C3, it was not upregulated in IRRAs. Instead, we found ~90 proteins unique to IRRAs not identified in NRAs, including OAS1A, IFIT3, and MX1. Interferon signaling in astrocytes is critical for the antiviral immune response and for regulating synaptic plasticity and glutamate transport mechanisms. How IRRAs contribute to these functions is unknown. This study provides the basis for future experiments to define the functional roles of IRRAs in the context of neurodegenerative disorders.

Indexed as

AstrocytesInterferonsAnimalsCentral Nervous SystemHumansMembrane ProteinsProteomicsRNA-Binding ProteinsRodentiaIFITM3 protein, humanInterferonsMembrane ProteinsRNA-Binding Proteinsastrocytesgliainterferonproteomequantitative proteomicsreactive astrocytes

Identifiers

PMID38031883
PMCPMC10843807
OpenAlexW4389180451

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.