Evidence map›Paper›PMID 38031652›Full record

ArticleJournal of veterinary science2023

Analysis of miRNA expression in the trachea of Ri chicken infected with the highly pathogenic avian influenza H5N1 virus.

Suyeon Kang, Thi Hao Vu, Jubi Heo, Chaeeun Kim, Hyun S Lillehoj, Yeong Ho Hong

Open access · goldAbstract read
In one paragraph

Article in Journal of veterinary science, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Suyeon KangDepartment of Animal Science and Technology, Chung-Ang University, Anseong 17546, Korea.ORCID https://orcid.org/0000-0002-9435-9318
Thi Hao VuDepartment of Animal Science and Technology, Chung-Ang University, Anseong 17546, Korea.ORCID https://orcid.org/0000-0001-9098-6990
Jubi HeoDepartment of Animal Science and Technology, Chung-Ang University, Anseong 17546, Korea.ORCID https://orcid.org/0000-0002-9869-3831
Chaeeun KimDepartment of Animal Science and Technology, Chung-Ang University, Anseong 17546, Korea.ORCID https://orcid.org/0009-0002-9482-5398
Hyun S LillehojAnimal Biosciences and Biotechnology Laboratory, Agricultural Research Services, United States Department of Agriculture, Beltsville, MD 20705, USA.ORCID https://orcid.org/0000-0001-7755-6216
Yeong Ho HongDepartment of Animal Science and Technology, Chung-Ang University, Anseong 17546, Korea. yhong@cau.ac.kr.ORCID https://orcid.org/0000-0002-4510-7851
Chung-Ang University · KRAgricultural Research Service · US

Funding

National Research Foundation of Korea NRF-2021R1A2C2005236
6 · The paper itself

Abstract

backgroundHighly pathogenic avian influenza virus (HPAIV) is considered a global threat to both human health and the poultry industry. MicroRNAs (miRNA) can modulate the immune system by affecting gene expression patterns in HPAIV-infected chickens.

objectivesTo gain further insights into the role of miRNAs in immune responses against H5N1 infection, as well as the development of strategies for breeding disease-resistant chickens, we characterized miRNA expression patterns in tracheal tissues from H5N1-infected Ri chickens.

methodsmiRNAs expression was analyzed from two H5N1-infected Ri chicken lines using small RNA sequencing. The target genes of differentially expressed (DE) miRNAs were predicted using miRDB. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analysis were then conducted. Furthermore, using quantitative real-time polymerase chain reaction, we validated the expression levels of DE miRNAs (miR-22-3p, miR-146b-3p, miR-27b-3p, miR-128-3p, miR-2188-5p, miR-451, miR-205a, miR-203a, miR-21-3p, and miR-200a-3p) from all comparisons and their immune-related target genes.

resultsA total of 53 miRNAs were significantly expressed in the infection samples of the resistant compared to the susceptible line. Network analyses between the DE miRNAs and target genes revealed that DE miRNAs may regulate the expression of target genes involved in the transforming growth factor-beta, mitogen-activated protein kinase, and Toll-like receptor signaling pathways, all of which are related to influenza A virus progression.

conclusionsCollectively, our results provided novel insights into the miRNA expression patterns of tracheal tissues from H5N1-infected Ri chickens. More importantly, our findings offer insights into the relationship between miRNA and immune-related target genes and the role of miRNA in HPAIV infections in chickens.

Indexed as

Influenza A virusInfluenza A Virus, H5N1 SubtypeInfluenza in BirdsMicroRNAsAnimalsChickensHumansTracheaMicroRNAshigh-throughput rna sequencingimmunityInfluenza A virusnetwork analysissignal transduction

Identifiers

PMID38031652
PMCPMC10556288
OpenAlexW4386617562

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.