Evidence map›Paper›PMID 38031051›Full record

ArticleBMC veterinary research2023

Epidemiology and Genomic characteristics of arenavirus in rodents from the southeast coast of P.R. China.

Qinghua Xie, Changqiang Zhu, Lele Ai, Danyue Nie, Yifan Wu, Chongcai Wang, Ji He, Weilong Tan, Lingling Zhang

Open access · goldAbstract read
In one paragraph

Article in BMC veterinary research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Qinghua XieState Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops & Key Laboratory of Biopesticide and Chemical Biology of Ministry of Education, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Changqiang ZhuNanjing Bioengineering (Gene) Technology Center for Medicines, Nanjing, 210002, China.
Lele AiNanjing Bioengineering (Gene) Technology Center for Medicines, Nanjing, 210002, China.
Danyue NieNanjing Bioengineering (Gene) Technology Center for Medicines, Nanjing, 210002, China.
Yifan WuNanjing Bioengineering (Gene) Technology Center for Medicines, Nanjing, 210002, China.
Chongcai WangHainan International Travel Healthcare Center, Haikou, 570311, China.
Ji HeXiamen International Travel Healthcare Center, (Xiamen Customs Port Outpatient Department), Xiamen, Fujian, 361012, China. honjie@126.com.
Weilong TanNanjing Bioengineering (Gene) Technology Center for Medicines, Nanjing, 210002, China. njcdc@163.com.
Lingling ZhangState Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops & Key Laboratory of Biopesticide and Chemical Biology of Ministry of Education, Fujian Agriculture and Forestry University, Fuzhou, 350002, China. lingling00264@163.com.
Gene Tech (China) · CNFujian Agriculture and Forestry University · CNShenzhen International Travel Health Care Center · CNXiamen Tobacco Industry (China) · CN

Funding

Natural Science Foundation of Fujian Province 2020J01550,202210029 and 2020I0031The Guiding project of Science and technology plan of Fujian Province 2022Y0061The Special Fund for Scientific and Technological Innovation of Fujian Agriculture and Forestry University KFA20124Athe United Fujian Provincial Health and Education Project for Tackling Key Research 2019-WJ-29
6 · The paper itself

Abstract

backgroundWenzhou virus (WENV), a member of the Mammarenavirus genus in the Arenaviridae family, has been detected in wild rodents from eight provinces in China, including Zhejiang, Shandong, Hainan, Xinjiang, Hunan, Guangdong, Yunnan, and Jiangxi provinces, and some countries from Southeast Asia. The IgG-antibodies of WENV have been detected in both healthy populations and patients with unknown fever and respiratory symptoms. However, the potential harmfulness of WENV to humans has been underestimated due to mild symptoms after infection, similar to respiratory diseases. Thus, it is imperative to enhance the surveillance of WENV in wild rodents, particularly Rattus norvegicus, and continuously monitor its prevalence.

resultsFrom 2017 to 2021, a total of 390 wild rodents were collected from six provinces in the eastern and southern coastal areas, containing nine species of rats. Samples of each tissue were collected, and PCR amplified for identification. Four R. norvegicus samples were detected to be WENV-positive. No genomic sequence of WENV was detected in Rattus flavipectus, Rattus losea, Suncus murinus, Apodemus agrarius, Mus musculus, Microtus fortis, Micromys minutus, and Niviventer niviventer from Jiangsu, Zhejiang, Fujian, Hainan, Guangdong and Guangxi provinces. Three genomic sequences were identified to be WENV by phylogenetic analysis. The full-length sequences of HAIKOU-40 were amplified in R. norvegicus from Hainan, which showed a close relationship to Wufeng/ WFS, sharing 84.5-89.4% homology at the nucleotide level and 91.6-98.9% homology at the amino acid level. Phylogenetic analysis revealed that HAIKOU-40 formed an Asia-specific cluster with all WENVs and Loie River mammarenavirus (LORV), provisionally named Asian ancestry. This cluster has diverged earlier from the remaining mammarenavirus. The sequences obtained in Xiamen, Fujian province showed more than 90% nucleotide identities with WENV, which may be a strain of WENV. Additionally, the sequence of Wuxi-87 which was a positive sequence detected in Wuxi, Jiangsu province exhibited 83% nucleotide identity with Lassa virus (LASV). Further efforts will be made to isolate and identify this virus strain, verify the relationship between Wuxi-87 and LASV, and confirm whether R. norvegicus is a new host of LASV.

conclusionsIn this study, we conducted a systematic examination of the prevalence of WENV among rodents on the southeast coast of China. Additionally, we characterized the genome of a newly discovered WENV strain, that confirmed the role of R. norvegicus in the transmission of WENV. This highlights the importance of investigating the prevalence of WENV in both wild rodents and humans.

Indexed as

ArenavirusRodentiaAnimalsArenaviridaeChinaGenomicsHumansMiceNucleotidesPhylogenyRatsNucleotidesEpidemiologyGenomic characterizationRodentsSoutheast coastal regionWenzhou virus

Identifiers

PMID38031051
PMCPMC10685642
OpenAlexW4389152422

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.