Evidence map›Paper›PMID 38030753›Full record

ArticleJournal of human genetics2024

A heterozygous germline deletion within USP8 causes severe neurodevelopmental delay with multiorgan abnormalities.

Masamune Sakamoto, Kenji Kurosawa, Koji Tanoue, Kazuhiro Iwama, Fumihiko Ishida, Yoshihiro Watanabe, Nobuhiko Okamoto, Naomi Tsuchida, Yuri Uchiyama, Eriko Koshimizu and 5 more

Abstract readCase Reports
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In one paragraph

Article in Journal of human genetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 1 country.

Masamune SakamotoDepartment of Human Genetics, Graduate School of Medicine, Yokohama City University, Yokohama, Japan.
Kenji KurosawaDivision of Medical Genetics, Kanagawa Children's Medical Center, Yokohama, Japan.ORCID http://orcid.org/0000-0002-6817-7748
Koji TanoueDepartment of General Medicine, Kanagawa Children's Medical Center, Yokohama, Japan.
Kazuhiro IwamaDepartment of Human Genetics, Graduate School of Medicine, Yokohama City University, Yokohama, Japan.
Fumihiko IshidaPerinatal Center for Maternity and Neonate, Yokohama City University Medical Center, Yokohama, Japan.
Yoshihiro WatanabeChildren's Medical Center, Yokohama City University Medical Center, Yokohama, Japan.ORCID http://orcid.org/0000-0002-5552-5715
Nobuhiko OkamotoDepartment of Medical Genetics, Osaka Women's and Children's Hospital, Izumi, Japan.
Naomi TsuchidaDepartment of Human Genetics, Graduate School of Medicine, Yokohama City University, Yokohama, Japan.ORCID http://orcid.org/0000-0001-7203-884X
Yuri UchiyamaDepartment of Human Genetics, Graduate School of Medicine, Yokohama City University, Yokohama, Japan.ORCID http://orcid.org/0000-0002-4540-5277
Eriko KoshimizuDepartment of Human Genetics, Graduate School of Medicine, Yokohama City University, Yokohama, Japan.ORCID http://orcid.org/0000-0001-9947-3315
Atsushi FujitaDepartment of Human Genetics, Graduate School of Medicine, Yokohama City University, Yokohama, Japan.
Kazuharu MisawaDepartment of Human Genetics, Graduate School of Medicine, Yokohama City University, Yokohama, Japan.ORCID http://orcid.org/0000-0002-6277-4330
Satoko MiyatakeDepartment of Human Genetics, Graduate School of Medicine, Yokohama City University, Yokohama, Japan.ORCID http://orcid.org/0000-0001-7587-5168
Takeshi MizuguchiDepartment of Human Genetics, Graduate School of Medicine, Yokohama City University, Yokohama, Japan.ORCID http://orcid.org/0000-0003-4998-1244
Naomichi MatsumotoDepartment of Human Genetics, Graduate School of Medicine, Yokohama City University, Yokohama, Japan. naomat@yokohama-cu.ac.jp.ORCID http://orcid.org/0000-0001-9846-6500
Yokohama City University · JPYokohama City University Hospital · JPYokohama City University Medical Center · JPKanagawa Children's Medical Center · JPOsaka Women's and Children's Hospital · JPRIKEN Center for Advanced Intelligence Project · JP

Funding

Japan Agency for Medical Research and Development (AMED) JP23ek0109549Japan Agency for Medical Research and Development (AMED) JP23ek0109617Japan Agency for Medical Research and Development (AMED) JP23ek0109648Japan Agency for Medical Research and Development (AMED) JP23ek0109674MEXT | Japan Society for the Promotion of Science (JSPS) JP21K07869MEXT | Japan Society for the Promotion of Science (JSPS) JP22K15901MEXT | Japan Society for the Promotion of Science (JSPS) JP23H02829MEXT | Japan Society for the Promotion of Science (JSPS) JP23H02877MEXT | Japan Society for the Promotion of Science (JSPS) JP23K07229MEXT | Japan Society for the Promotion of Science (JSPS) JP23K15353
6 · The paper itself

Abstract

Ubiquitin-specific protease 8 (USP8) is a deubiquitinating enzyme involved in deubiquitinating the enhanced epidermal growth factor receptor for escape from degradation. Somatic variants at a hotspot in USP8 are a cause of Cushing's disease, and a de novo germline USP8 variant at this hotspot has been described only once previously, in a girl with Cushing's disease and developmental delay. In this study, we investigated an exome-negative patient with severe developmental delay, dysmorphic features, and multiorgan dysfunction by long-read sequencing, and identified a 22-kb de novo germline deletion within USP8 (chr15:50469966-50491995 [GRCh38]). The deletion involved the variant hotspot, one rhodanese domain, and two SH3 binding motifs, and was presumed to be generated through nonallelic homologous recombination through Alu elements. Thus, the patient may have perturbation of the endosomal sorting system and mitochondrial autophagy through the USP8 defect. This is the second reported case of a germline variant in USP8.

Indexed as

Pituitary ACTH HypersecretionEndopeptidasesEndosomal Sorting Complexes Required for TransportFemaleGerm CellsGerm-Line MutationHumansUbiquitin ThiolesteraseEndopeptidasesEndosomal Sorting Complexes Required for TransportUbiquitin ThiolesteraseUSP8 protein, human

Identifiers

PMID38030753
OpenAlexW4389154230

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.